C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542837 SLC8A2-003 ENSG00000118160 9606 - 19:47428661-47471872 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyOvaryTestisENST00000542837
Transcript ID Adipose Bladder Brain Colon Heart Kidney Ovary Testis
ENST00000542837 0.069±0.00 0.021±0.00 16.361±0.00 1.093±0.98 0.042±0.00 0.017±0.00 0.061±0.04 1.156±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 IEA calcium:sodium antiporter activity
GO:0006816 IEA calcium ion transport
GO:0007154 IEA cell communication
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168693 Slc8a2-201 protein_coding Mus_musculus 0 2608
ENSDART00000063721 slc8a2b-201 protein_coding Danio_rerio 0 789
ENSDART00000097701 slc8a2b-202 protein_coding Danio_rerio 0 789
ENSDART00000144567 slc8a2b-001 protein_coding Danio_rerio 0 789
ENSDART00000100204 slc8a3-001 protein_coding Danio_rerio 0 481

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