C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VII
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169121 Syt7-203 ENSMUSG00000024743 10090 + 19:10389090-10453181 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000169121
Transcript ID Adipose Adrenal Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000169121 0.246±0.09 1.255±0.00 7.008±3.41 0.191±0.03 0.925±0.02 0.037±0.02 0.077±0.02 2.248±0.13 0.066±0.03 0.877±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 IDA plasma membrane repair
GO:0005215 IEA transporter activity
GO:0005509 IEA calcium ion binding
GO:0005764 IDA lysosome
GO:0005886 IEA plasma membrane
GO:0006887 IEA exocytosis
GO:0008021 IEA synaptic vesicle
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0031045 IEA dense core granule
GO:0045956 IEA positive regulation of calcium ion-dependent exocytosis
GO:0050796 IEA regulation of insulin secretion
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101231 syt7b-201 protein_coding Danio_rerio 0 568
ENSDART00000093003 SYT7 (1 of 2)-201 protein_coding Danio_rerio 0 481
ENSDART00000154038 SYT7 (1 of 2)-001 protein_coding Danio_rerio 0 481
ENST00000263846 SYT7-001 protein_coding Homo_sapiens 0 1895
ENST00000492450 ZNF181-002 protein_coding Homo_sapiens 0.0003 53
ENST00000535826 SYT7-006 protein_coding Homo_sapiens 0 1426
ENST00000539008 SYT7-007 protein_coding Homo_sapiens 0 2252
ENST00000539246 SYT7-004 nonsense_mediated_decay Homo_sapiens 0 2246
ENST00000539468 SYT7-005 nonsense_mediated_decay Homo_sapiens 0 2252
ENST00000540677 SYT7-003 protein_coding Homo_sapiens 0 1888
ENST00000540831 SYT7-009 processed_transcript Homo_sapiens 0 333
ENST00000542670 SYT7-002 protein_coding Homo_sapiens 0 2254
ENST00000542836 SYT7-008 protein_coding Homo_sapiens 0 1426
ENST00000545053 SYT7-011 protein_coding Homo_sapiens 0 411

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