C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 37
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169309 Nup37-202 ENSMUSG00000035351 10090 + 10:88147071-88178388 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000169309
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000169309 0.621±0.00 1.633±0.00 0.407±0.00 0.581±0.21 1.418±0.42 0.531±0.17 1.279±0.65 1.570±0.57 0.629±0.44 0.685±0.42 1.512±0.44 2.149±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0002 VISTA 10:87568234-88170738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0031080 IEA nuclear pore outer ring
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251074 NUP37-201 protein_coding Homo_sapiens 0 1206
ENST00000543021 NUP37-003 processed_transcript Homo_sapiens 0 695
ENST00000547269 NUP37-006 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000551200 NUP37-002 retained_intron Homo_sapiens 0 926
ENST00000551744 NUP37-008 protein_coding Homo_sapiens 0 582
ENST00000552283 NUP37-001 protein_coding Homo_sapiens 0 1206

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