C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bloom syndrome, RecQ helicase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170315 Blm-202 ENSMUSG00000030528 10090 - 7:80454993-80534998 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartOvaryTestisENSMUST00000170315
Transcript ID Adipose Adrenal Breast Heart Ovary Testis
ENSMUST00000170315 0.067±0.00 0.143±0.00 0.302±0.00 0.104±0.00 0.616±0.00 2.616±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000228 ISS nuclear chromosome
GO:0000405 IEA bubble DNA binding
GO:0000723 IGI telomere maintenance
GO:0000729 ISS DNA double-strand break processing
GO:0000733 IEA DNA strand renaturation
GO:0000781 IEA chromosome, telomeric region
GO:0000800 IEA lateral element
GO:0001673 IDA male germ cell nucleus
GO:0002039 IEA p53 binding
GO:0003677 IEA DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0004003 ISS ATP-dependent DNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006281 IDA DNA repair
GO:0006310 IEA DNA recombination
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0009378 IEA four-way junction helicase activity
GO:0010165 IEA response to X-ray
GO:0016363 IEA nuclear matrix
GO:0016605 IEA PML body
GO:0016887 IEA ATPase activity
GO:0031297 IEA replication fork processing
GO:0032508 IEA DNA duplex unwinding
GO:0036310 IEA annealing helicase activity
GO:0043140 IDA ATP-dependent 3'-5' DNA helicase activity
GO:0045120 IDA pronucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045910 IEA negative regulation of DNA recombination
GO:0045950 IMP negative regulation of mitotic recombination
GO:0046632 IMP alpha-beta T cell differentiation
GO:0046641 IMP positive regulation of alpha-beta T cell proliferation
GO:0051098 IDA regulation of binding
GO:0051259 IEA protein oligomerization
GO:0051276 IMP chromosome organization
GO:0051782 IEA negative regulation of cell division
GO:0051880 IEA G-quadruplex DNA binding
GO:0070244 IGI negative regulation of thymocyte apoptotic process
GO:0071479 ISS cellular response to ionizing radiation
GO:0072711 ISS cellular response to hydroxyurea
GO:0072757 ISS cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355112 BLM-001 protein_coding Homo_sapiens 0 3572
ENST00000558599 BLM-007 processed_transcript Homo_sapiens 1e-35 154
ENST00000558825 BLM-005 retained_intron Homo_sapiens 0 1199
ENST00000559426 BLM-009 processed_transcript Homo_sapiens 0 638
ENST00000559724 BLM-003 nonsense_mediated_decay Homo_sapiens 0 3323
ENST00000560136 BLM-004 processed_transcript Homo_sapiens 0 2156
ENST00000560509 BLM-002 protein_coding Homo_sapiens 0 2712
ENST00000560559 BLM-011 retained_intron Homo_sapiens 0 566
ENST00000560821 BLM-010 processed_transcript Homo_sapiens 0 442

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