C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170489 Ddx6-201 ENSMUSG00000032097 10090 + 9:44604892-44640731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170489 11.446±9.64 17.944±2.07 6.674±2.78 9.586±5.73 17.051±4.60 18.062±1.73 5.609±3.78 6.699±5.68 7.341±2.59 19.253±6.88 2.467±0.88 24.622±8.96 9.462±5.13 5.683±2.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISO cytoplasmic mRNA processing body
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0016442 IEA RISC complex
GO:0033962 ISO cytoplasmic mRNA processing body assembly
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000421811 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1421
ENST00000428340 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000437197 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000440720 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000441966 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000445549 DDX6P1-001 processed_pseudogene Homo_sapiens 0 1430
ENST00000525082 DDX6-003 retained_intron Homo_sapiens 0 573
ENST00000526070 DDX6-002 protein_coding Homo_sapiens 0 2634
ENST00000529162 DDX6-004 retained_intron Homo_sapiens 0 1541
ENST00000531971 DDX6-006 retained_intron Homo_sapiens 0 688
ENST00000533239 DDX6-005 retained_intron Homo_sapiens 0 573
ENST00000534980 DDX6-001 protein_coding Homo_sapiens 0 3555
ENST00000617381 DDX6-201 protein_coding Homo_sapiens 0 1158
ENST00000619520 DDX6P2-001 processed_pseudogene Homo_sapiens 0 1698
ENST00000620157 DDX6-202 protein_coding Homo_sapiens 0 3692

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