C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sulfatase modifying factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171300 Sumf2-201 ENSMUSG00000025538 10090 + 5:129846990-129863951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000171300
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000171300 4.178±0.27 8.673±2.56 2.881±0.16 4.789±0.51 3.127±0.56 2.244±1.14 3.599±0.86 2.011±0.74 5.514±1.91 3.248±1.80 0.812±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MA CIL_0006MA_0002 CGP 5:129787439-129864050
CIL_00072K CIL_00072K_0003 CGP 5:129846990-129898549

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275607 SUMF2-201 protein_coding Homo_sapiens 0 673
ENST00000342190 SUMF2-015 protein_coding Homo_sapiens 0 573
ENST00000413756 SUMF2-013 protein_coding Homo_sapiens 0 721
ENST00000413952 SUMF2-003 protein_coding Homo_sapiens 0 675
ENST00000434526 SUMF2-001 protein_coding Homo_sapiens 0 806
ENST00000447501 SUMF2-008 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000451338 SUMF2-012 protein_coding Homo_sapiens 0 595
ENST00000452216 SUMF2-005 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000529457 SUMF2-017 retained_intron Homo_sapiens 0 401

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