C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 168
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171474 Rnf168-201 ENSMUSG00000014074 10090 + 16:32277461-32301434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171474
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171474 0.865±0.45 0.738±0.22 1.625±0.32 1.899±0.66 0.470±0.13 0.701±0.24 0.392±0.19 0.533±0.22 1.897±1.36 0.719±0.03 0.706±0.17 1.993±0.60 1.290±0.72 1.042±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 ISS ubiquitin ligase complex
GO:0003682 ISS chromatin binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005739 IEA mitochondrion
GO:0006302 ISS double-strand break repair
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0010212 ISS response to ionizing radiation
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031491 IEA nucleosome binding
GO:0034244 ISS negative regulation of transcription elongation from RNA polymerase II promoter
GO:0035518 ISS histone H2A monoubiquitination
GO:0035861 ISS site of double-strand break
GO:0036351 ISS histone H2A-K13 ubiquitination
GO:0036352 ISS histone H2A-K15 ubiquitination
GO:0042393 ISS histone binding
GO:0043130 ISS ubiquitin binding
GO:0045190 IMP isotype switching
GO:0045739 ISS positive regulation of DNA repair
GO:0070530 ISS K63-linked polyubiquitin binding
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070535 ISS histone H2A K63-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318037 RNF168-001 protein_coding Homo_sapiens 0 841
ENST00000437070 RNF168-002 nonsense_mediated_decay Homo_sapiens 0 507

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