C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ornithine decarboxylase, structural 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171737 Odc1-201 ENSMUSG00000011179 10090 + 12:17544873-17551502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171737 34.571±9.73 106.982±38.21 19.059±5.84 58.342±34.42 26.793±6.27 69.184±11.58 22.797±0.39 179.977±22.28 135.918±137.60 34.281±2.83 29.675±13.91 93.926±31.50 182.930±102.94 150.607±34.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032U CIL_00032U_0002 CGP 12:17348458-17551502

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0004586 IDA ornithine decarboxylase activity
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006595 IEA polyamine metabolic process
GO:0008284 IMP positive regulation of cell proliferation
GO:0009446 IEA putrescine biosynthetic process
GO:0009615 IEA response to virus
GO:0033387 IEA putrescine biosynthetic process from ornithine
GO:0042176 IDA regulation of protein catabolic process
GO:0042803 IDA protein homodimerization activity
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234111 ODC1-001 protein_coding Homo_sapiens 0 1988
ENST00000405333 ODC1-002 protein_coding Homo_sapiens 0 1637
ENST00000446285 ODC1-004 processed_transcript Homo_sapiens 0 307

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