C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ornithine decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234111 ODC1-001 ENSG00000115758 9606 - 2:10439968-10448504 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234111
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234111 1.615±0.00 4.224±0.00 1.806±0.50 3.235±0.38 23.091±0.00 1.464±0.00 3.825±0.00 2.943±1.74 2.268±0.32 10.220±3.40 11.973±10.08 1.752±0.02 30.619±9.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0003824 IEA catalytic activity
GO:0004586 ISS ornithine decarboxylase activity
GO:0005575 ND cellular_component
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006595 TAS polyamine metabolic process
GO:0006596 IEA polyamine biosynthetic process
GO:0008284 IEA positive regulation of cell proliferation
GO:0009615 IEP response to virus
GO:0033387 ISS putrescine biosynthetic process from ornithine
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042176 ISS regulation of protein catabolic process
GO:0042803 ISS protein homodimerization activity
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171737 Odc1-201 protein_coding Mus_musculus 0 1988
ENSMUST00000119135 Gm15470-001 processed_pseudogene Mus_musculus 0 1400
ENSMUST00000120192 Gm9115-001 processed_pseudogene Mus_musculus 0 1373
ENSMUST00000119836 Gm7278-001 processed_pseudogene Mus_musculus 0 1271
ENSMUST00000183393 Gm15645-002 transcribed_processed_pseudogene Mus_musculus 0 1195
ENSMUST00000184198 Gm8982-001 processed_pseudogene Mus_musculus 0 1195
ENSMUST00000174536 Gm17709-001 processed_pseudogene Mus_musculus 0 970
ENSMUST00000120431 Gm12846-001 processed_pseudogene Mus_musculus 0 856
ENSMUST00000131504 Gm15645-001 processed_transcript Mus_musculus 0 652
ENSMUST00000119457 Gm14788-001 processed_pseudogene Mus_musculus 0 411

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