C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172450 Pafah1b2-201 ENSMUSG00000003131 10090 - 9:45965311-45984871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172450 24.559±4.59 37.395±2.87 18.010±1.31 50.539±15.90 23.305±4.82 16.637±1.06 8.772±0.83 18.626±1.88 15.689±7.50 27.477±0.70 3.183±0.16 33.307±10.35 22.102±4.51 20.386±12.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003847 IEA 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006928 TAS cellular component movement
GO:0007283 IGI spermatogenesis
GO:0007420 IEA brain development
GO:0016042 IEA lipid catabolic process
GO:0016239 IEA positive regulation of macroautophagy
GO:0042803 IEA protein homodimerization activity
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304808 PAFAH1B2-007 protein_coding Homo_sapiens 0 785
ENST00000419197 PAFAH1B2-201 protein_coding Homo_sapiens 0 680
ENST00000438281 RP1-258N20.3-001 processed_pseudogene Homo_sapiens 0 715
ENST00000527958 PAFAH1B2-001 protein_coding Homo_sapiens 0 1496
ENST00000529887 PAFAH1B2-006 protein_coding Homo_sapiens 0 676
ENST00000530272 PAFAH1B2-004 protein_coding Homo_sapiens 0 640
ENST00000533206 PAFAH1B2-008 retained_intron Homo_sapiens 0 597

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