C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: steroid receptor RNA activator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173875 Sra1-001 ENSMUSG00000006050 10090 - 18:36666681-36671196 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZN CIL_0006ZN_0002 CGP 18:36664060-36679366
CIL_0006ZI CIL_0006ZI_0002 CGP 18:36666681-36683861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003712 ISO transcription cofactor activity
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005831 ISO steroid hormone aporeceptor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISO regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0008283 ISS cell proliferation
GO:0010861 IDA thyroid hormone receptor activator activity
GO:0030154 ISS cell differentiation
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030529 ISS ribonucleoprotein complex
GO:0031252 IDA cell leading edge
GO:0042981 ISS regulation of apoptotic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:2000273 IDA positive regulation of receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336283 SRA1-001 protein_coding Homo_sapiens 0 710
ENST00000354402 APBB3-002 protein_coding Homo_sapiens 0.000000004 68
ENST00000356738 APBB3-001 protein_coding Homo_sapiens 0.000000004 68
ENST00000357560 APBB3-003 protein_coding Homo_sapiens 0.000000005 68
ENST00000358580 APBB3-201 protein_coding Homo_sapiens 0.0000000001 73
ENST00000467078 APBB3-004 nonsense_mediated_decay Homo_sapiens 0.000000004 68
ENST00000509914 APBB3-005 nonsense_mediated_decay Homo_sapiens 0.0000000001 73
ENST00000510241 APBB3-006 retained_intron Homo_sapiens 0.0000000001 73
ENST00000515056 APBB3-009 retained_intron Homo_sapiens 0.00000000003 75
ENST00000520427 SRA1-004 processed_transcript Homo_sapiens 0 601
ENST00000523259 SRA1-003 retained_intron Homo_sapiens 0 355
ENST00000602775 SRA1-002 retained_intron Homo_sapiens 0 606
ENST00000602875 SRA1-005 retained_intron Homo_sapiens 0 355

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