C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: steroid receptor RNA activator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006050 Sra1 10090 - 18:36666681-36679366 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001415 Sra1-201 36671160-36679366 protein_coding
  ENSMUST00000006209 Sra1-005 36667429-36670285 protein_coding
  ENSMUST00000173202 Sra1-004 36667272-36670306 retained_intron
  ENSMUST00000173482 Sra1-002 36667246-36670286 nonsense_mediated_decay
  ENSMUST00000173875 Sra1-001 36666681-36671196 protein_coding
  ENSMUST00000174125 Sra1-003 36669822-36670276 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000001415ENSMUST00000006209ENSMUST00000173482
Transcript ID Adipose Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000001415 22.652±0.17 23.649±3.81 19.449±4.26 23.163±0.00 8.067±1.77 9.228±1.23 12.479±0.42 6.486±0.00 8.100±1.50
ENSMUST00000006209 N/A N/A 33.239±0.00 N/A 30.467±5.69 N/A 69.090±0.00 53.086±12.18 25.749±7.29
ENSMUST00000173482 N/A N/A 40.449±0.00 N/A 19.773±0.66 27.524±3.62 64.001±13.89 67.697±29.32 52.648±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZN CIL_0006ZN_0002 CGP 18:36664060-36679366
CIL_0006ZI CIL_0006ZI_0002 CGP 18:36666681-36683861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003712 ISO transcription cofactor activity
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005831 ISO steroid hormone aporeceptor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISO regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0008283 ISS cell proliferation
GO:0010861 IDA thyroid hormone receptor activator activity
GO:0015629 IEA actin cytoskeleton
GO:0030154 ISS cell differentiation
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030529 ISS ribonucleoprotein complex
GO:0031252 IDA cell leading edge
GO:0042981 ISS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:2000273 IDA positive regulation of receptor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053771 APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 protein_coding Danio_rerio
ENSG00000113108 APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 protein_coding Homo_sapiens

Loading