C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU domain, class 5, transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173934 Pou5f1-002 ENSMUSG00000024406 10090 + 17:35507482-35510134 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000173934
Transcript ID Placenta
ENSMUST00000173934 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001710 IDA mesodermal cell fate commitment
GO:0001711 IDA endodermal cell fate commitment
GO:0001712 IDA ectodermal cell fate commitment
GO:0001714 ISO endodermal cell fate specification
GO:0001829 IGI trophectodermal cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0010033 IDA response to organic substance
GO:0017053 IDA transcriptional repressor complex
GO:0019827 IMP stem cell maintenance
GO:0030718 IMP germ-line stem cell maintenance
GO:0032526 IDA response to retinoic acid
GO:0043565 IDA sequence-specific DNA binding
GO:0044798 IDA nuclear transcription factor complex
GO:0045165 IMP cell fate commitment
GO:0045596 IGI negative regulation of cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0045955 IDA negative regulation of calcium ion-dependent exocytosis
GO:0046982 IDA protein heterodimerization activity
GO:0048863 IDA stem cell differentiation
GO:0051897 IMP positive regulation of protein kinase B signaling
GO:0051898 IMP negative regulation of protein kinase B signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000445059 POU5F1P5-001 processed_pseudogene Homo_sapiens 0 291

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