C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycogenin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178328 Gyg-201 ENSMUSG00000019528 10090 - 3:20122087-20155096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178328
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178328 39.038±13.04 32.731±3.47 19.962±0.13 4.733±2.37 45.222±22.13 8.686±1.65 56.419±2.13 14.455±0.66 7.122±3.74 54.800±9.65 173.624±8.61 12.423±4.77 8.023±5.10 1.054±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089F CIL_00089F_0002 VISTA 3:19844419-20446014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005536 IEA glucose binding
GO:0005978 IEA glycogen biosynthetic process
GO:0008466 IEA glycogenin glucosyltransferase activity
GO:0016020 IEA membrane
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296048 GYG1-002 protein_coding Homo_sapiens 0 1203
ENST00000345003 GYG1-001 protein_coding Homo_sapiens 0 981
ENST00000449769 GYG1P3-001 processed_pseudogene Homo_sapiens 0 974
ENST00000461191 GYG1-008 protein_coding Homo_sapiens 0 900
ENST00000465547 GYG1-010 processed_transcript Homo_sapiens 0 244
ENST00000469873 GYG1-014 retained_intron Homo_sapiens 0 331
ENST00000473005 GYG1-009 protein_coding Homo_sapiens 0 403
ENST00000478067 GYG1-006 processed_transcript Homo_sapiens 0 363
ENST00000479119 GYG1-013 processed_transcript Homo_sapiens 2e-38 163
ENST00000483267 GYG1-003 protein_coding Homo_sapiens 0 614
ENST00000484197 GYG1-004 protein_coding Homo_sapiens 0 793
ENST00000492285 GYG1-007 protein_coding Homo_sapiens 0 588

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