C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural retina leucine zipper gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178694 Nrl-203 ENSMUSG00000040632 10090 - 14:55519528-55524965 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverMuscleOvaryPlacentaTestisENSMUST00000178694
Transcript ID Adipose Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000178694 0.018±0.00 0.113±0.13 0.013±0.01 0.034±0.00 0.102±0.06 0.006±0.00 0.084±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F9 CIL_0003F9_0002 CGP 14:55510445-55524981
CIL_0003F6 CIL_0003F6_0002 CGP 14:55518978-55550017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0007468 IMP regulation of rhodopsin gene expression
GO:0043565 IEA sequence-specific DNA binding
GO:0045872 IDA positive regulation of rhodopsin gene expression
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046548 IMP retinal rod cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396995 NRL-001 protein_coding Homo_sapiens 0 442
ENST00000396997 NRL-003 protein_coding Homo_sapiens 0 785
ENST00000397002 NRL-002 protein_coding Homo_sapiens 0 826
ENST00000560550 NRL-006 protein_coding Homo_sapiens 0 440
ENST00000561028 NRL-004 protein_coding Homo_sapiens 0 785

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