C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosome production factor 2 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183309 Rpf2-002 ENSMUSG00000038510 10090 - 10:40223427-40247036 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000183309
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000183309 0.876±0.21 4.554±0.41 4.926±0.00 0.797±0.46 1.473±0.36 1.390±0.50 5.907±5.89 0.738±0.41 5.463±0.85 4.428±4.11 9.440±4.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FT CIL_0002FT_0002 CGP 10:40033535-40247036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368864 RPF2-002 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000424137 RPF2P1-001 processed_pseudogene Homo_sapiens 0 1005
ENST00000425871 RPF2-003 protein_coding Homo_sapiens 0 928
ENST00000441448 RPF2-001 protein_coding Homo_sapiens 0 1134
ENST00000607388 RPF2-004 nonsense_mediated_decay Homo_sapiens 0 928

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