C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: kelch-like family member 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000209884 KLHL20-001 ENSG00000076321 9606 + 1:173714984-173786702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000209884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000209884 4.129±0.00 4.472±0.00 0.365±0.00 2.524±0.11 3.330±0.70 2.565±0.14 0.965±0.24 3.389±0.00 2.667±1.27 2.802±1.06 0.782±0.53 4.025±1.02 3.127±1.31 3.850±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WG CIL_0001WG_0002 CGP 1:173714941-173824720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006895 IMP Golgi to endosome transport
GO:0007010 TAS cytoskeleton organization
GO:0015031 IEA protein transport
GO:0015629 TAS actin cytoskeleton
GO:0016567 IDA protein ubiquitination
GO:0016605 IDA PML body
GO:0019964 IDA interferon-gamma binding
GO:0031463 IDA Cul3-RING ubiquitin ligase complex
GO:0035455 TAS response to interferon-alpha
GO:0042995 IEA cell projection
GO:0043066 IMP negative regulation of apoptotic process
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:1990390 IDA protein K33-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117467 Klhl20-005 nonsense_mediated_decay Mus_musculus 0 2833
ENSMUST00000111611 Klhl20-001 protein_coding Mus_musculus 0 2833
ENSMUST00000148952 Klhl20-003 retained_intron Mus_musculus 0 2002
ENSMUST00000140905 Klhl20-002 retained_intron Mus_musculus 0 2002
ENSMUST00000145736 Klhl20-004 retained_intron Mus_musculus 0 983

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