C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Mediterranean fever
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219596 MEFV-001 ENSG00000103313 9606 - 16:3242028-3256627 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaENST00000219596
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta
ENST00000219596 0.059±0.00 0.216±0.00 0.091±0.00 0.096±0.00 0.125±0.00 1.691±0.00 0.134±0.01 0.163±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029F CIL_00029F_0002 CGP 16:3222325-3256627
CIL_0001SW CIL_0001SW_0001 CGP 16:3242028-3301401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0006954 IDA inflammatory response
GO:0008270 NAS:IEA zinc ion binding
GO:0032691 IMP negative regulation of interleukin-1 beta production
GO:0032695 IMP negative regulation of interleukin-12 production
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0042995 IEA cell projection
GO:0045087 TAS innate immune response
GO:0050728 IMP negative regulation of inflammatory response
GO:0071641 IMP negative regulation of macrophage inflammatory protein 1 alpha production
GO:2001056 IDA positive regulation of cysteine-type endopeptidase activity

Homologs

No Homologs available.

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