C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 4, subfamily F, polypeptide 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221307 CYP4F3-001 ENSG00000186529 9606 + 19:15640900-15662825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartOvaryPlacentaTestisENST00000221307
Transcript ID Adipose Adrenal Breast Heart Ovary Placenta Testis
ENST00000221307 0.275±0.00 0.050±0.00 0.061±0.00 0.019±0.01 0.048±0.00 0.036±0.01 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019Y CIL_00019Y_0001 CGP 19:15508493-15630638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 TAS monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006690 TAS icosanoid metabolic process
GO:0006691 TAS leukotriene metabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019369 TAS arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0036101 IEA leukotriene B4 catabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050051 IEA leukotriene-B4 20-monooxygenase activity
GO:0052871 IEA alpha-tocopherol omega-hydroxylase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003574 Cyp4f18-001 protein_coding Mus_musculus 0 1356
ENSMUST00000054174 Cyp4f14-201 protein_coding Mus_musculus 0 1242
ENSMUST00000179434 Cyp4f14-202 protein_coding Mus_musculus 0 1242
ENSMUST00000008801 Cyp4f15-002 protein_coding Mus_musculus 0 1225
ENSMUST00000165061 Cyp4f40-201 protein_coding Mus_musculus 0 1168
ENSMUST00000168171 Cyp4f15-001 protein_coding Mus_musculus 0 1127
ENSMUST00000165515 Cyp4f16-002 nonsense_mediated_decay Mus_musculus 0 1059
ENSMUST00000003416 Cyp4f16-003 protein_coding Mus_musculus 0 1059
ENSMUST00000169591 Cyp4f16-001 protein_coding Mus_musculus 0 1059
ENSMUST00000165999 Cyp4f17-201 protein_coding Mus_musculus 0 1051
ENSMUST00000075253 Cyp4f13-001 protein_coding Mus_musculus 0 1046
ENSMUST00000077639 Cyp4f37-201 protein_coding Mus_musculus 0 1000
ENSMUST00000137222 Cyp4f13-004 nonsense_mediated_decay Mus_musculus 0 784
ENSMUST00000139353 Cyp4f13-002 protein_coding Mus_musculus 0 784
ENSMUST00000168346 Cyp4f16-004 retained_intron Mus_musculus 0 686
ENSMUST00000169252 Cyp4f16-005 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000168285 Cyp4f16-009 retained_intron Mus_musculus 0 555
ENSMUST00000141975 Cyp4f18-003 processed_transcript Mus_musculus 0 433
ENSMUST00000125448 Cyp4f18-002 processed_transcript Mus_musculus 0 387
ENSMUST00000170956 Cyp4f16-007 processed_transcript Mus_musculus 0 316
ENSMUST00000163736 Cyp4f16-008 retained_intron Mus_musculus 0 272
ENSMUST00000141325 Cyp4f13-006 nonsense_mediated_decay Mus_musculus 1.99993e-41 176
ENSMUST00000126790 Cyp4f41-ps-001 unprocessed_pseudogene Mus_musculus 0.0000000000004 82
ENSMUST00000123653 Cyp4f13-007 retained_intron Mus_musculus 0.000000000002 81

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