C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222573 ITGB8-001 ENSG00000105855 9606 + 7:20331123-20415754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222573
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222573 0.383±0.00 0.649±0.00 5.886±0.00 10.652±3.11 1.267±0.13 1.616±0.85 0.271±0.13 5.191±5.10 2.557±0.00 0.860±0.42 0.052±0.04 1.510±0.37 2.291±1.37 1.092±0.54

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001573 IEA ganglioside metabolic process
GO:0004872 IEA receptor activity
GO:0005102 IEA receptor binding
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 TAS integrin complex
GO:0009986 IDA cell surface
GO:0010628 IMP positive regulation of gene expression
GO:0010629 IMP negative regulation of gene expression
GO:0016020 IEA membrane
GO:0030198 TAS extracellular matrix organization
GO:0034686 IDA integrin alphav-beta8 complex
GO:0051216 IMP cartilage development
GO:0060674 TAS placenta blood vessel development
GO:0070062 IDA extracellular vesicular exosome
GO:1990430 IDA extracellular matrix protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026360 Itgb8-001 protein_coding Mus_musculus 0 3027
ENSMUST00000151023 Itgb8-003 retained_intron Mus_musculus 0 1520
ENSMUST00000137804 Itgb8-002 retained_intron Mus_musculus 0 769
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000002 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00001 58

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