C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: distal-less homeobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222598 DLX5-001 ENSG00000105880 9606 - 7:97020392-97025097 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000222598
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000222598 0.148±0.00 0.257±0.00 0.389±0.10 0.063±0.01 0.108±0.02 0.076±0.00 0.117±0.00 0.237±0.00 0.231±0.00 0.248±0.13 7.735±0.24 0.860±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VC CIL_0008VC_0001 VISTA 7:96704270-97304991
CIL_0005LA CIL_0005LA_0002 CGP 7:97005548-97025097
CIL_00053E CIL_00053E_0001 CGP 7:97020392-97181763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 ISS nuclear chromatin
GO:0000978 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 TAS skeletal system development
GO:0001649 ISS osteoblast differentiation
GO:0001958 ISS endochondral ossification
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 TAS nervous system development
GO:0007409 IEA axonogenesis
GO:0007411 IEA axon guidance
GO:0008283 IDA cell proliferation
GO:0030326 IEA embryonic limb morphogenesis
GO:0030509 ISS BMP signaling pathway
GO:0030855 IEA epithelial cell differentiation
GO:0042472 IEA inner ear morphogenesis
GO:0043583 IEA ear development
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0060021 IEA palate development
GO:0060166 IEA olfactory pit development
GO:0060322 IEA head development
GO:0060325 IEA face morphogenesis
GO:0060349 IEA bone morphogenesis
GO:0071773 ISS cellular response to BMP stimulus
GO:0071837 IEA HMG box domain binding
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway
GO:1901522 ISS positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052609 Dlx5-001 protein_coding Mus_musculus 0 1794
ENSMUST00000142635 Dlx5-002 protein_coding Mus_musculus 0 1029
ENSDART00000062026 dlx5a-201 protein_coding Danio_rerio 0 333
ENSDART00000113388 dlx5a-001 protein_coding Danio_rerio 0 333

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