C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs298 VISTA 9606 7:96704270-97304991
GeneTranscriptPositionBiotype
ENSG00000006377 (DLX6)
distal-less homeobox 6 		ENST00000493273 (DLX6-002) 97006493-97010176 processed_transcript
ENST00000518156 (DLX6-001) 97005548-97011039 protein_coding
ENST00000555308 (DLX6-003) 97007425-97010054 protein_coding
ENSG00000105880 (DLX5)
distal-less homeobox 5 		ENST00000222598 (DLX5-001) 97020392-97025097 protein_coding
ENST00000486603 (DLX5-003) 97021978-97024950 protein_coding
ENST00000493764 (DLX5-002) 97020666-97024827 processed_transcript
ENSG00000127922 (SHFM1)
split hand/foot malformation (ectrodactyly) type 1 		ENST00000248566 (SHFM1-003) 96687951-96709891 protein_coding
ENST00000356686 (SHFM1-201) 96481626-96496342 protein_coding
ENST00000413065 (SHFM1-006) 96673457-96709851 protein_coding
ENST00000417009 (SHFM1-008) 96622562-96709861 protein_coding
ENST00000444799 (SHFM1-007) 96649195-96709858 protein_coding
ENST00000449279 (SHFM1-004) 96672564-96709880 nonsense_mediated_decay
ENST00000466986 (SHFM1-002) 96486206-96709812 nonsense_mediated_decay
ENST00000476463 (SHFM1-009) 96706222-96709873 processed_transcript
ENST00000482389 (SHFM1-010) 96688769-96697372 retained_intron
ENST00000488005 (SHFM1-005) 96673249-96709851 protein_coding
ENST00000493858 (SHFM1-001) 96481626-96503523 processed_transcript
ENST00000606019 (SHFM1-015) 96621657-96664338 processed_transcript
ENST00000611360 (SHFM1-012) 96483713-96503510 processed_transcript
ENST00000613919 (SHFM1-011) 96486273-96709775 nonsense_mediated_decay
ENST00000615352 (SHFM1-202) 96481626-96496342 protein_coding
ENST00000616956 (SHFM1-019) 96622430-96645932 processed_transcript
ENST00000617133 (SHFM1-020) 96486272-96709775 nonsense_mediated_decay
ENST00000618028 (SHFM1-018) 96645823-96664245 processed_transcript
ENST00000618105 (SHFM1-014) 96486272-96709775 nonsense_mediated_decay
ENST00000619259 (SHFM1-013) 96486272-96709775 nonsense_mediated_decay
ENST00000622128 (SHFM1-016) 96645838-96664285 processed_transcript
ENST00000622838 (SHFM1-017) 96645390-96664285 processed_transcript
ENST00000623498 (SHFM1-021) 96645588-96709826 protein_coding
ENST00000623693 (SHFM1-022) 96645391-96709780 protein_coding
ENSG00000196636 (ACN9)
ACN9 homolog (S. cerevisiae) 		ENST00000360382 (ACN9-002) 97117723-97181487 protein_coding
ENST00000432641 (ACN9-001) 97116590-97181763 protein_coding
ENST00000479853 (ACN9-003) 97142681-97181647 processed_transcript
ENST00000489852 (ACN9-004) 97117701-97142835 processed_transcript
ENSG00000224475 (AC073900.4)
 ENST00000429766 (AC073900.4-001) 97200708-97201483 processed_pseudogene
ENSG00000224551 (HMGB3P21)
high mobility group box 3 pseudogene 21 		ENST00000452483 (HMGB3P21-001) 97135015-97135561 processed_pseudogene
ENSG00000227284 (MARK2P10)
MAP/microtubule affinity-regulating kinase 2 pseudogene 10 		ENST00000454959 (MARK2P10-001) 96858182-96859618 processed_pseudogene
ENSG00000231764 (DLX6-AS1)
DLX6 antisense RNA 1 		ENST00000430027 (DLX6-AS1-001) 96955141-97014065 antisense
ENST00000430404 (DLX6-AS1-005) 96968527-97011882 antisense
ENST00000431497 (DLX6-AS1-003) 96965527-97004298 antisense
ENST00000437331 (DLX6-AS1-004) 96965527-97014060 antisense
ENST00000437541 (DLX6-AS1-006) 96979081-97011882 antisense
ENST00000452769 (DLX6-AS1-007) 96965434-97014064 antisense
ENST00000458352 (DLX6-AS1-002) 96978468-97012049 antisense
ENST00000605417 (DLX6-AS1-008) 96965527-97014025 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0008VC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs298 VISTA 10090 6:6561655-7162377
GeneTranscriptPositionBiotype
ENSMUSG00000029754 (Dlx6)
distal-less homeobox 6 		ENSMUST00000031768 (Dlx6-002) 6863797-6867967 protein_coding
ENSMUST00000160937 (Dlx6-001) 6863334-6868568 protein_coding
ENSMUST00000171311 (Dlx6-201) 6863334-6867970 protein_coding
ENSMUST00000172943 (Dlx6-004) 6863798-6865430 retained_intron
ENSMUSG00000029755 (Dlx5)
distal-less homeobox 5 		ENSMUST00000052609 (Dlx5-001) 6877805-6882085 protein_coding
ENSMUST00000142635 (Dlx5-002) 6877805-6882068 protein_coding
ENSMUSG00000042505 (Acn9)
ACN9 homolog (S. cerevisiae) 		ENSMUST00000040826 (Acn9-001) 6956004-7042979 protein_coding
ENSMUST00000123848 (Acn9-002) 6956007-6965658 processed_transcript
ENSMUSG00000042541 (Shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSMUST00000041111 (Shfm1-001) 6557294-6578658 protein_coding
ENSMUSG00000090063 (Dlx6os1)
distal-less homeobox 6, opposite strand 1 		ENSMUST00000159568 (Dlx6os1-001) 6820543-6869531 antisense
ENSMUST00000159827 (Dlx6os1-002) 6820189-6861591 antisense
ENSMUSG00000093581 (Gm18006)
predicted gene, 18006 		ENSMUST00000177411 (Gm18006-001) 6645334-6647278 processed_pseudogene
ENSMUSG00000093651 (Gm5873)
predicted gene 5873 		ENSMUST00000177157 (Gm5873-001) 6735427-6736492 processed_pseudogene
ENSMUSG00000093675 (Gm20618)
predicted gene 20618 		ENSMUST00000177161 (Gm20618-001) 6633486-6691521 lincRNA
ENSMUST00000177482 (Gm20618-002) 6603712-6684806 lincRNA
ENSMUSG00000094868 (Dlx6os2)
distal-less homeobox 6, opposite strand 2 		ENSMUST00000178206 (Dlx6os2-001) 6863797-6865150 antisense
ENSMUSG00000097356 (Gm26774)
predicted gene, 26774 		ENSMUST00000181534 (Gm26774-001) 6952170-6955900 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006377 ENST00000493273 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.10 2.721±0.00 2.197±0.00
ENST00000518156 0.023±0.00 0.306±0.00 N/A 0.522±0.26 0.009±0.00 0.055±0.00 N/A 0.021±0.00 N/A N/A 0.112±0.02 0.063±0.03 2.618±0.25 1.491±0.22
ENST00000555308 0.047±0.00 N/A N/A 0.418±0.00 0.024±0.00 0.063±0.00 N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A
ENSG00000105880 ENST00000222598 0.148±0.00 0.257±0.00 N/A 0.389±0.10 0.063±0.01 0.108±0.02 0.076±0.00 0.117±0.00 0.237±0.00 N/A 0.231±0.00 0.248±0.13 7.735±0.24 0.860±0.17
ENST00000486603 N/A N/A 0.140±0.00 N/A N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493764 0.289±0.00 1.068±0.00 N/A 0.796±0.00 0.146±0.00 0.471±0.00 0.037±0.00 0.213±0.00 N/A 0.353±0.00 N/A 0.236±0.19 6.114±3.42 0.956±0.62
ENSG00000127922 ENST00000248566 19.496±0.00 14.333±0.00 2.615±0.00 8.629±1.31 9.605±2.31 8.669±3.35 4.773±0.33 6.695±0.21 6.563±1.53 7.063±1.75 6.682±0.68 37.411±30.10 28.905±17.80 32.036±8.50
ENST00000356686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417009 89.863±0.00 81.359±0.00 19.066±0.00 32.444±12.57 53.659±40.13 49.581±33.57 28.932±13.64 41.160±0.22 45.023±27.06 54.008±0.00 23.823±9.02 230.760±189.75 115.272±74.10 157.921±35.29
ENST00000444799 N/A N/A N/A 1.889±0.00 N/A N/A N/A N/A 1.793±0.00 2.419±0.00 N/A N/A N/A N/A
ENST00000449279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482389 N/A 2.780±0.00 0.772±0.00 0.939±0.00 1.137±0.00 N/A N/A N/A N/A 2.110±0.00 N/A 1.608±0.00 N/A N/A
ENST00000488005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196636 ENST00000360382 0.912±0.00 3.131±0.00 N/A 1.857±1.10 2.189±0.77 2.627±0.00 1.960±1.09 2.757±0.88 2.239±0.00 1.552±0.00 0.365±0.31 4.133±3.59 1.369±0.74 4.966±0.01
ENST00000432641 0.548±0.00 1.084±0.00 0.372±0.00 1.239±0.13 1.047±0.48 0.854±0.21 0.656±0.30 1.362±0.77 0.830±0.58 0.702±0.05 0.111±0.00 2.005±0.19 0.604±0.11 2.949±0.40
ENST00000479853 1.950±0.00 1.532±0.00 N/A 1.078±0.00 1.154±0.00 1.479±0.78 3.113±0.00 4.426±0.00 3.698±0.00 0.774±0.00 0.906±0.00 2.656±0.62 1.114±0.42 3.117±0.00
ENST00000489852 N/A N/A 1.150±0.00 N/A N/A 1.658±0.00 N/A N/A 0.423±0.00 N/A 0.679±0.00 N/A N/A 2.890±0.00
ENSG00000224475 ENST00000429766 0.061±0.00 0.022±0.00 N/A N/A 0.045±0.00 0.041±0.00 N/A 0.044±0.00 N/A 0.021±0.00 0.075±0.00 0.057±0.00 N/A 0.078±0.00
ENSG00000224551 ENST00000452483 N/A 0.020±0.00 0.964±0.00 0.061±0.00 N/A N/A N/A N/A 0.749±0.00 N/A N/A 0.285±0.23 N/A 0.035±0.00
ENSG00000227284 ENST00000454959 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A 0.021±0.00
ENSG00000231764 ENST00000430027 N/A 0.038±0.00 N/A 0.688±0.00 0.013±0.01 N/A 0.005±0.00 0.018±0.01 0.001±0.00 0.011±0.00 0.005±0.00 0.003±0.00 0.052±0.02 0.005±0.00
ENST00000430404 0.045±0.00 N/A 0.051±0.00 N/A N/A N/A 0.039±0.00 N/A N/A 0.085±0.00 N/A 0.038±0.00 0.437±0.00 0.085±0.00
ENST00000431497 N/A N/A N/A 0.826±0.35 N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.14 0.126±0.00
ENST00000437331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.08 0.470±0.00 N/A
ENST00000437541 N/A 0.867±0.00 N/A N/A 0.244±0.00 N/A N/A 0.236±0.00 0.675±0.58 0.072±0.00 0.153±0.00 N/A N/A 0.284±0.00
ENST00000452769 N/A 0.228±0.00 N/A N/A 0.034±0.00 0.034±0.00 0.017±0.00 N/A 0.060±0.06 N/A N/A 0.042±0.03 0.204±0.14 0.120±0.00
ENST00000458352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 0.373±0.00 N/A
ENST00000605417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029754 ENSMUST00000031768 4.818±2.01 0.101±0.00 N/A N/A N/A N/A 0.014±0.00 N/A 0.007±0.00 N/A 0.079±0.00 0.780±0.51 N/A 3.310±0.82
ENSMUST00000160937 0.309±0.29 0.043±0.03 0.013±0.00 1.352±0.84 0.088±0.04 0.151±0.07 0.016±0.00 0.033±0.02 0.036±0.03 0.074±0.04 0.023±0.00 0.631±0.39 0.027±0.01 0.236±0.01
ENSMUST00000171311 0.822±0.82 N/A N/A 4.267±1.99 N/A N/A N/A N/A 0.003±0.00 N/A N/A 0.347±0.09 0.018±0.01 1.288±0.49
ENSMUST00000172943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029755 ENSMUST00000052609 2.381±1.58 0.122±0.06 0.019±0.00 3.758±2.09 0.127±0.04 0.042±0.01 N/A N/A 0.029±0.00 0.019±0.00 N/A 0.988±0.46 0.069±0.00 1.251±0.01
ENSMUST00000142635 0.698±0.64 0.024±0.02 0.014±0.00 1.427±0.57 0.110±0.03 0.046±0.00 0.046±0.01 0.019±0.00 0.028±0.02 N/A 0.078±0.02 0.841±0.56 0.048±0.01 0.894±0.00
ENSMUSG00000042505 ENSMUST00000040826 0.531±0.06 0.308±0.11 0.695±0.04 1.111±0.12 0.328±0.05 0.261±0.12 0.463±0.15 0.564±0.10 0.519±0.13 0.452±0.12 1.995±0.38 0.422±0.34 0.397±0.15 0.349±0.11
ENSMUST00000123848 0.294±0.00 0.511±0.16 N/A N/A N/A 0.180±0.11 N/A 0.514±0.09 0.623±0.15 N/A N/A 0.648±0.00 0.495±0.18 0.373±0.15
ENSMUSG00000042541 ENSMUST00000041111 20.140±5.83 16.411±1.52 40.598±1.84 13.634±5.00 14.402±5.17 26.797±3.04 20.897±4.34 24.445±4.75 37.267±18.12 30.813±1.46 25.093±4.54 25.641±4.60 36.321±16.85 25.732±3.90
ENSMUSG00000090063 ENSMUST00000159568 0.386±0.06 0.074±0.00 N/A 1.295±0.00 N/A N/A 0.012±0.00 N/A 0.005±0.00 N/A N/A 0.168±0.13 0.003±0.00 N/A
ENSMUST00000159827 1.220±0.15 N/A N/A 0.402±0.00 N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.123±0.07 0.003±0.00 0.108±0.00
ENSMUSG00000093581 ENSMUST00000177411 0.096±0.00 N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093651 ENSMUST00000177157 0.713±0.30 0.349±0.22 N/A 0.105±0.02 0.322±0.15 0.414±0.19 0.051±0.03 0.157±0.10 0.099±0.04 0.376±0.14 N/A 1.037±0.53 0.010±0.01 0.411±0.12
ENSMUSG00000093675 ENSMUST00000177161 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.090±0.00 N/A 0.466±0.07 N/A N/A
ENSMUST00000177482 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.031±0.02 N/A
ENSMUSG00000094868 ENSMUST00000178206 N/A 0.149±0.02 N/A 0.770±0.00 N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A
ENSMUSG00000097356 ENSMUST00000181534 0.050±0.01 0.058±0.00 0.036±0.01 0.029±0.00 0.144±0.08 N/A 0.028±0.01 0.032±0.02 0.025±0.01 0.050±0.02 0.017±0.00 0.083±0.05 0.025±0.02 0.163±0.06

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