C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229729 SLC44A4-001 ENSG00000204385 9606 - 6:31863192-31879001 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLungOvaryPlacentaTestisENST00000229729
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000229729 0.341±0.00 0.285±0.00 2.045±0.00 2.563±0.00 7.623±3.56 17.638±0.00 12.981±10.93 8.197±6.16 3.393±0.00 1.666±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PN CIL_0001PN_0002 CGP 6:31863192-31897687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0008292 IMP acetylcholine biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0030307 IMP positive regulation of cell growth
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0061526 IMP acetylcholine secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007249 Slc44a4-001 protein_coding Mus_musculus 0 1775
ENSMUST00000169230 Slc44a4-002 protein_coding Mus_musculus 0 1519
ENSMUST00000173664 Slc44a4-003 retained_intron Mus_musculus 0 1445

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