C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: F-box and leucine-rich repeat protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229971 FBXL4-201 ENSG00000112234 9606 - 6:98873725-98948006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229971
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229971 0.803±0.00 1.303±0.43 1.281±0.13 1.413±0.00 2.607±0.29 1.117±0.34 1.901±1.10 0.854±0.00 1.549±0.23 1.556±0.43 1.697±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0001 UCNEbase 6:97068636-99185945
CIL_0007XF CIL_0007XF_0001 VISTA 6:98341485-98943167
CIL_00082C CIL_00082C_0001 VISTA 6:98676848-99278971
CIL_0001Y8 CIL_0001Y8_0002 CGP 6:98834592-98948006
CIL_0004FS CIL_0004FS_0002 CGP 6:98868538-99350062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS ubiquitin ligase complex
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005758 IDA mitochondrial intermembrane space
GO:0006511 TAS ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039234 Fbxl4-001 protein_coding Mus_musculus 0 2512
ENSMUST00000184582 Fbxl4-004 nonsense_mediated_decay Mus_musculus 0 2163
ENSMUST00000185029 Fbxl4-003 nonsense_mediated_decay Mus_musculus 0 1783
ENSMUST00000184455 Fbxl4-002 nonsense_mediated_decay Mus_musculus 0 1267

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