C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin 2 (retinal degeneration, slow)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230381 PRPH2-001 ENSG00000112619 9606 - 6:42696600-42722574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230381
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230381 0.169±0.00 0.624±0.00 0.187±0.00 1.354±0.00 0.403±0.22 0.527±0.02 0.222±0.11 0.286±0.27 0.118±0.05 0.177±0.15 1.946±0.82 1.017±0.80 0.413±0.13 1.549±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066H CIL_00066H_0002 CGP 6:42696600-42746096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007155 IEA cell adhesion
GO:0007601 IEA visual perception
GO:0009645 IEA response to low light intensity stimulus
GO:0016021 IEA integral component of membrane
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024773 Prph2-001 protein_coding Mus_musculus 0 1236
ENSMUST00000162469 Prph2-002 retained_intron Mus_musculus 0 1022

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