C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231656 CDX1-001 ENSG00000113722 9606 + 5:150166795-150184558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryTestisENST00000231656
Transcript ID Breast Colon Ovary Testis
ENST00000231656 0.615±0.00 4.472±2.17 1.923±0.00 0.220±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0009887 TAS organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060349 IEA bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025521 Cdx1-001 protein_coding Mus_musculus 0 881

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