C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000232888 RRP9-001 ENSG00000114767 9606 - 3:51933430-51941941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000232888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000232888 9.378±0.00 12.494±0.00 0.155±0.00 3.540±2.79 6.171±5.23 5.668±4.97 1.548±1.24 5.511±4.18 4.014±3.36 4.358±3.69 8.107±7.32 12.819±9.14 11.360±3.97 10.243±3.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005732 TAS small nucleolar ribonucleoprotein complex
GO:0006364 IEA rRNA processing
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047721 Rrp9-001 protein_coding Mus_musculus 0 1714
ENSMUST00000125630 Rrp9-002 retained_intron Mus_musculus 0 1018
ENSMUST00000185336 Rrp9-007 nonsense_mediated_decay Mus_musculus 0 274
ENSMUST00000131618 Rrp9-006 retained_intron Mus_musculus 0 239

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