C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteinase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234347 PRTN3-001 ENSG00000196415 9606 + 19:840960-848175 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverLungMuscleOvaryPlacentaTestisENST00000234347
Transcript ID Adipose Adrenal Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000234347 22.765±0.00 0.302±0.00 0.039±0.00 0.789±0.00 21.619±0.00 0.233±0.00 0.204±0.14 0.951±0.67 0.304±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000HZ CIL_0000HZ_0001 CGP 19:840960-856247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005615 IDA extracellular space
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006508 IEA proteolysis
GO:0008236 TAS serine-type peptidase activity
GO:0008284 TAS positive regulation of cell proliferation
GO:0019899 IPI enzyme binding
GO:0030574 IEA collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0050765 IDA negative regulation of phagocytosis
GO:0070062 IDA extracellular vesicular exosome
GO:0097029 IDA mature dendritic cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006679 Prtn3-001 protein_coding Mus_musculus 0 285
ENSMUST00000165982 Prtn3-002 retained_intron Mus_musculus 0 198
ENSMUST00000163188 Prtn3-004 processed_transcript Mus_musculus 0 198
ENSMUST00000171489 Prtn3-006 retained_intron Mus_musculus 2e-39 167
ENSMUST00000166201 Prtn3-005 protein_coding Mus_musculus 2e-25 121
ENSMUST00000164134 Prtn3-003 retained_intron Mus_musculus 2e-25 121

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