C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SYF2 pre-mRNA-splicing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000236273 SYF2-001 ENSG00000117614 9606 - 1:25222679-25232493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000236273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000236273 28.298±0.00 21.374±0.00 7.708±0.00 9.791±2.50 12.071±4.35 19.929±12.34 6.802±2.81 14.538±9.99 9.589±3.25 11.732±2.11 9.709±8.45 21.669±7.39 22.369±2.61 21.548±6.68

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001701 IEA in utero embryonic development
GO:0005634 IDA nucleus
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0007369 IEA gastrulation
GO:0044822 IDA poly(A) RNA binding
GO:0048568 IEA embryonic organ development
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030622 Syf2-001 protein_coding Mus_musculus 0 713
ENSMUST00000144037 Syf2-003 retained_intron Mus_musculus 0 239

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