C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBP-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000237264 TBPL1-001 ENSG00000028839 9606 + 6:133953195-133990432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENST00000237264
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000237264 0.525±0.00 1.273±0.16 0.191±0.06 0.265±0.00 0.406±0.00 1.023±0.00 0.456±0.00 0.944±0.41 0.372±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014M CIL_00014M_0002 CGP 6:133889138-133990432
CIL_00014L CIL_00014L_0002 CGP 6:133952170-134052636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005672 IEA transcription factor TFIIA complex
GO:0005737 IEA cytoplasm
GO:0006235 IEA dTTP biosynthetic process
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007283 IEA spermatogenesis
GO:0007289 IEA spermatid nucleus differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127698 Tbpl1-001 protein_coding Mus_musculus 0 1799
ENSMUST00000095794 Tbpl1-002 protein_coding Mus_musculus 0 1358
ENSMUST00000138022 Tbpl1-004 retained_intron Mus_musculus 0 521
ENSMUST00000141569 Tbpl1-005 processed_transcript Mus_musculus 0 364
ENSDART00000053534 tbpl1-001 protein_coding Danio_rerio 0 213

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