C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239174 HOXB1-001 ENSG00000120094 9606 - 17:48528526-48530997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLungOvaryTestisENST00000239174
Transcript ID Adipose Breast Lung Ovary Testis
ENST00000239174 0.011±0.00 0.013±0.00 0.064±0.00 0.120±0.00 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0007389 TAS pattern specification process
GO:0009653 IEA anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0019904 IPI protein domain specific binding
GO:0021546 IEA rhombomere development
GO:0021570 IEA rhombomere 4 development
GO:0021571 IEA rhombomere 5 development
GO:0021612 IEA facial nerve structural organization
GO:0021754 IEA facial nucleus development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0 957

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