C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: frizzled class receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240093 FZD3-001 ENSG00000104290 9606 + 8:28494256-28574268 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240093
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240093 1.502±0.49 0.426±0.00 0.099±0.00 0.039±0.00 0.077±0.00 0.788±0.00 0.001±0.00 0.334±0.18 0.183±0.00 1.175±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000935 CIL_000935_0001 VISTA 8:28213350-28814343
CIL_00013A CIL_00013A_0002 CGP 8:28348287-28574268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001736 IBA establishment of planar polarity
GO:0001843 IBA neural tube closure
GO:0001944 IBA vasculature development
GO:0004888 IEA transmembrane signaling receptor activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007199 IBA G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger
GO:0008406 IBA gonad development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017147 IPI Wnt-protein binding
GO:0021754 IBA facial nucleus development
GO:0030165 IPI PDZ domain binding
GO:0030182 ISS neuron differentiation
GO:0030424 IBA axon
GO:0030425 IBA dendrite
GO:0032589 IBA neuron projection membrane
GO:0033278 IBA cell proliferation in midbrain
GO:0042472 IBA inner ear morphogenesis
GO:0042813 IBA Wnt-activated receptor activity
GO:0043025 IBA neuronal cell body
GO:0045177 IBA apical part of cell
GO:0048786 IBA presynaptic active zone
GO:0060070 IDA canonical Wnt signaling pathway
GO:0071679 IBA commissural neuron axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131309 Fzd3-001 protein_coding Mus_musculus 0 3755
ENSMUST00000127272 Fzd3-003 processed_transcript Mus_musculus 0 516

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