C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin-B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000245323 EFNB2-001 ENSG00000125266 9606 - 13:106489731-106535114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245323
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245323 25.835±0.00 14.651±0.00 4.543±3.29 7.186±1.07 7.614±4.82 4.659±0.00 3.854±3.21 1.337±0.48 12.017±5.26 1.293±0.75 3.326±2.15 14.297±2.10 5.427±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y9 CIL_0008Y9_0001 VISTA 13:106048447-106651741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001945 IEA lymph vessel development
GO:0002042 IDA cell migration involved in sprouting angiogenesis
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005886 IBA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0007267 TAS cell-cell signaling
GO:0007411 IBA axon guidance
GO:0009653 TAS anatomical structure morphogenesis
GO:0009887 IEA organ morphogenesis
GO:0010839 IEA negative regulation of keratinocyte proliferation
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0048514 IEA blood vessel morphogenesis
GO:0050920 IDA regulation of chemotaxis
GO:2000727 ISS positive regulation of cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001319 Efnb2-001 protein_coding Mus_musculus 0 2078
ENSMUST00000152698 Efnb2-002 protein_coding Mus_musculus 0 636

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