C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: split hand/foot malformation (ectrodactyly) type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248566 SHFM1-003 ENSG00000127922 9606 - 7:96687951-96709891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248566 19.496±0.00 14.333±0.00 2.615±0.00 8.629±1.31 9.605±2.31 8.669±3.35 4.773±0.33 6.695±0.21 6.563±1.53 7.063±1.75 6.682±0.68 37.411±30.10 28.905±17.80 32.036±8.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W8 CIL_0007W8_0001 VISTA 7:95945535-96548789
CIL_00097Z CIL_00097Z_0001 VISTA 7:96146093-96746679
CIL_000980 CIL_000980_0001 VISTA 7:96195606-96796103
CIL_000981 CIL_000981_0001 VISTA 7:96291763-96892262

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0000724 IBA double-strand break repair via homologous recombination
GO:0005515 IPI protein binding
GO:0032039 IDA integrator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041111 Shfm1-001 protein_coding Mus_musculus 0 357

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