C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007W8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1642 VISTA 9606 7:95945535-96548789
GeneTranscriptPositionBiotype
ENSG00000004864 (SLC25A13)
solute carrier family 25 (aspartate/glutamate carrier), member 13 		ENST00000265631 (SLC25A13-001) 96120220-96322093 protein_coding
ENST00000416240 (SLC25A13-201) 96120221-96322147 protein_coding
ENST00000472162 (SLC25A13-005) 96193148-96322136 nonsense_mediated_decay
ENST00000484495 (SLC25A13-003) 96169868-96189379 processed_transcript
ENST00000487710 (SLC25A13-004) 96296898-96309684 processed_transcript
ENST00000490072 (SLC25A13-002) 96146554-96185011 processed_transcript
ENST00000492869 (SLC25A13-006) 96170044-96184574 processed_transcript
ENST00000494085 (SLC25A13-007) 96120956-96121998 processed_transcript
ENSG00000127922 (SHFM1)
split hand/foot malformation (ectrodactyly) type 1 		ENST00000248566 (SHFM1-003) 96687951-96709891 protein_coding
ENST00000356686 (SHFM1-201) 96481626-96496342 protein_coding
ENST00000413065 (SHFM1-006) 96673457-96709851 protein_coding
ENST00000417009 (SHFM1-008) 96622562-96709861 protein_coding
ENST00000444799 (SHFM1-007) 96649195-96709858 protein_coding
ENST00000449279 (SHFM1-004) 96672564-96709880 nonsense_mediated_decay
ENST00000466986 (SHFM1-002) 96486206-96709812 nonsense_mediated_decay
ENST00000476463 (SHFM1-009) 96706222-96709873 processed_transcript
ENST00000482389 (SHFM1-010) 96688769-96697372 retained_intron
ENST00000488005 (SHFM1-005) 96673249-96709851 protein_coding
ENST00000493858 (SHFM1-001) 96481626-96503523 processed_transcript
ENST00000606019 (SHFM1-015) 96621657-96664338 processed_transcript
ENST00000611360 (SHFM1-012) 96483713-96503510 processed_transcript
ENST00000613919 (SHFM1-011) 96486273-96709775 nonsense_mediated_decay
ENST00000615352 (SHFM1-202) 96481626-96496342 protein_coding
ENST00000616956 (SHFM1-019) 96622430-96645932 processed_transcript
ENST00000617133 (SHFM1-020) 96486272-96709775 nonsense_mediated_decay
ENST00000618028 (SHFM1-018) 96645823-96664245 processed_transcript
ENST00000618105 (SHFM1-014) 96486272-96709775 nonsense_mediated_decay
ENST00000619259 (SHFM1-013) 96486272-96709775 nonsense_mediated_decay
ENST00000622128 (SHFM1-016) 96645838-96664285 processed_transcript
ENST00000622838 (SHFM1-017) 96645390-96664285 processed_transcript
ENST00000623498 (SHFM1-021) 96645588-96709826 protein_coding
ENST00000623693 (SHFM1-022) 96645391-96709780 protein_coding
ENSG00000208025 (MIR591)
microRNA 591 		ENST00000385290 (MIR591-201) 96219662-96219756 miRNA
ENSG00000220987 (AC084368.1)
 ENST00000408060 (AC084368.1-201) 96306760-96306860 miRNA
ENSG00000237551 (AC096775.2)
 ENST00000437724 (AC096775.2-001) 96283357-96283804 processed_pseudogene
ENSG00000275834 (RP11-440E5.1)
 ENST00000620935 (RP11-440E5.1-001) 96306810-96306874 processed_pseudogene
ENSG00000279067 (GS1-25M2.1)
 ENST00000625023 (GS1-25M2.1-001) 96118647-96119995 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007W8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1642 VISTA 10090 6:5861772-6464755
GeneTranscriptPositionBiotype
ENSMUSG00000015112 (Slc25a13)
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 		ENSMUST00000015256 (Slc25a13-001) 6041218-6217118 protein_coding
ENSMUST00000169197 (Slc25a13-002) 6041218-6191317 processed_transcript
ENSMUST00000177698 (Slc25a13-007) 6109181-6191317 processed_transcript
ENSMUST00000177805 (Slc25a13-008) 6041221-6191317 processed_transcript
ENSMUST00000179756 (Slc25a13-009) 6109181-6181069 processed_transcript
ENSMUST00000188130 (Slc25a13-201) 6041219-6217173 protein_coding
ENSMUST00000188414 (Slc25a13-202) 6041219-6217173 protein_coding
ENSMUST00000189611 (Slc25a13-203) 6041219-6217173 protein_coding
ENSMUSG00000029757 (Dync1i1)
dynein cytoplasmic 1 intermediate chain 1 		ENSMUST00000115554 (Dync1i1-004) 5725812-6028039 protein_coding
ENSMUST00000115555 (Dync1i1-002) 5725763-6028030 protein_coding
ENSMUST00000115556 (Dync1i1-001) 5725639-6028039 protein_coding
ENSMUST00000115559 (Dync1i1-003) 5725791-6028039 protein_coding
ENSMUST00000153942 (Dync1i1-005) 5725818-5767050 protein_coding
ENSMUSG00000085416 (1700019G24Rik)
RIKEN cDNA 1700019G24 gene 		ENSMUST00000130004 (1700019G24Rik-001) 5963909-5977393 antisense
ENSMUSG00000093482 (Gm20619)
predicted gene 20619 		ENSMUST00000175814 (Gm20619-002) 6248690-6378675 lincRNA
ENSMUST00000176283 (Gm20619-001) 6248687-6364097 lincRNA
ENSMUST00000181192 (Gm20619-004) 6248718-6281135 lincRNA
ENSMUST00000181343 (Gm20619-005) 6299421-6363892 lincRNA
ENSMUST00000181633 (Gm20619-003) 6248659-6281139 lincRNA
ENSMUSG00000093658 (Gm20617)
predicted gene 20617 		ENSMUST00000177082 (Gm20617-002) 6456593-6484487 lincRNA
ENSMUST00000177332 (Gm20617-001) 6456189-6484321 lincRNA
ENSMUSG00000097175 (Gm27018)
predicted gene, 27018 		ENSMUST00000181136 (Gm27018-001) 6329998-6330222 processed_pseudogene
ENSMUSG00000097669 (Gm8649)
predicted gene 8649 		ENSMUST00000181799 (Gm8649-001) 6329762-6329994 processed_pseudogene
ENSMUSG00000097900 (Gm8652)
predicted gene 8652 		ENSMUST00000181363 (Gm8652-001) 6351304-6352267 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007W8_0001ENSG00000004864ENST00000265631ENST00000416240ENST00000472162ENSG00000127922ENST00000248566ENST00000417009ENST00000444799ENST00000482389ENSG00000208025ENST00000385290ENSG00000220987ENST00000408060ENSG00000237551ENST00000437724ENSG00000275834ENST00000620935ENSG00000279067ENST00000625023CIL_0007W8_0002ENSMUSG00000015112ENSMUST00000015256ENSMUST00000169197ENSMUST00000177698ENSMUST00000177805ENSMUST00000179756ENSMUST00000188414ENSMUSG00000029757ENSMUST00000115554ENSMUST00000115555ENSMUST00000115556ENSMUST00000115559ENSMUSG00000085416ENSMUST00000130004ENSMUSG00000093482ENSMUST00000175814ENSMUST00000176283ENSMUST00000181192ENSMUST00000181343ENSMUST00000181633ENSMUSG00000093658ENSMUST00000177082ENSMUST00000177332ENSMUSG00000097175ENSMUST00000181136ENSMUSG00000097669ENSMUST00000181799ENSMUSG00000097900ENSMUST00000181363
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004864 ENST00000265631 2.923±0.00 4.687±0.00 2.939±0.00 2.458±0.81 2.831±0.00 2.585±1.37 1.528±0.91 15.299±2.71 12.116±10.61 1.829±0.61 0.927±0.00 12.547±10.73 7.892±0.87 4.058±0.76
ENST00000416240 N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A 2.921±0.00 1.977±0.00 N/A
ENST00000472162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.322±0.00 11.479±0.00 5.239±0.00
ENST00000484495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000127922 ENST00000248566 19.496±0.00 14.333±0.00 2.615±0.00 8.629±1.31 9.605±2.31 8.669±3.35 4.773±0.33 6.695±0.21 6.563±1.53 7.063±1.75 6.682±0.68 37.411±30.10 28.905±17.80 32.036±8.50
ENST00000356686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417009 89.863±0.00 81.359±0.00 19.066±0.00 32.444±12.57 53.659±40.13 49.581±33.57 28.932±13.64 41.160±0.22 45.023±27.06 54.008±0.00 23.823±9.02 230.760±189.75 115.272±74.10 157.921±35.29
ENST00000444799 N/A N/A N/A 1.889±0.00 N/A N/A N/A N/A 1.793±0.00 2.419±0.00 N/A N/A N/A N/A
ENST00000449279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482389 N/A 2.780±0.00 0.772±0.00 0.939±0.00 1.137±0.00 N/A N/A N/A N/A 2.110±0.00 N/A 1.608±0.00 N/A N/A
ENST00000488005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000208025 ENST00000385290 N/A N/A N/A N/A 0.553±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000220987 ENST00000408060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 141.648±0.00 N/A N/A
ENSG00000237551 ENST00000437724 0.027±0.00 N/A N/A 0.027±0.00 0.114±0.00 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000275834 ENST00000620935 N/A N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00
ENSG00000279067 ENST00000625023 N/A 0.056±0.00 N/A 0.146±0.03 N/A 0.043±0.00 N/A N/A 0.019±0.01 N/A N/A N/A N/A 0.009±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015112 ENSMUST00000015256 0.874±0.73 1.821±0.68 1.226±0.02 1.069±0.05 0.888±0.26 2.147±1.17 20.504±2.51 19.532±5.92 31.364±17.33 1.295±0.00 0.179±0.06 3.926±2.62 8.991±5.59 0.949±0.35
ENSMUST00000169197 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A 0.037±0.00 1.659±0.52 2.308±1.37 N/A
ENSMUST00000177698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 7.096±0.00 8.278±5.02 0.852±0.00
ENSMUST00000177805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A
ENSMUST00000179756 N/A N/A N/A 0.951±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188414 1.793±0.00 1.539±0.72 N/A 0.729±0.00 N/A 3.597±1.75 4.700±0.00 2.477±0.00 4.848±2.51 1.153±0.17 N/A 2.348±1.13 4.130±2.00 N/A
ENSMUST00000189611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029757 ENSMUST00000115554 0.491±0.55 0.677±0.37 0.100±0.00 1.205±0.26 0.134±0.02 1.122±0.31 0.149±0.02 0.465±0.08 0.030±0.03 0.101±0.00 0.042±0.01 6.334±4.10 0.160±0.09 3.093±1.08
ENSMUST00000115555 N/A 0.449±0.10 N/A N/A 0.078±0.00 0.643±0.33 N/A 0.347±0.00 N/A 0.057±0.00 N/A 3.663±1.69 N/A 0.854±0.39
ENSMUST00000115556 N/A 0.107±0.03 N/A 2.425±1.94 N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A
ENSMUST00000115559 N/A 0.341±0.17 N/A 14.272±14.74 N/A 0.559±0.02 N/A 0.274±0.12 N/A 0.129±0.00 N/A 5.605±2.11 N/A 0.495±0.00
ENSMUST00000153942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085416 ENSMUST00000130004 N/A N/A N/A 0.205±0.00 N/A N/A 0.086±0.00 0.154±0.05 N/A N/A 0.060±0.00 0.291±0.13 0.129±0.09 85.767±38.65
ENSMUSG00000093482 ENSMUST00000175814 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00
ENSMUST00000176283 N/A N/A 0.031±0.01 N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A 0.058±0.00 0.028±0.02 2.537±1.05
ENSMUST00000181192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.340±1.41
ENSMUST00000181343 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 0.011±0.00 0.126±0.03 N/A N/A 0.053±0.00 N/A
ENSMUST00000181633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.107±0.00
ENSMUSG00000093658 ENSMUST00000177082 N/A N/A N/A N/A N/A N/A 0.072±0.02 0.054±0.00 N/A N/A N/A N/A N/A 0.017±0.00
ENSMUST00000177332 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 0.016±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUSG00000097175 ENSMUST00000181136 N/A N/A 0.217±0.00 0.631±0.00 N/A N/A 0.888±0.00 N/A N/A N/A N/A 1.245±0.00 8.835±0.00 N/A
ENSMUSG00000097669 ENSMUST00000181799 N/A N/A N/A N/A N/A N/A 0.747±0.02 N/A N/A N/A N/A N/A N/A 0.629±0.00
ENSMUSG00000097900 ENSMUST00000181363 N/A N/A 0.027±0.00 0.021±0.01 N/A N/A 0.367±0.14 N/A 0.030±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.711±0.66

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