C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255476 RFXAP-001 ENSG00000133111 9606 + 13:36819224-36829104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255476 1.517±0.00 2.170±0.00 0.213±0.00 1.867±1.33 1.471±0.16 0.731±0.09 0.966±0.00 0.686±0.60 0.315±0.05 0.705±0.00 0.330±0.27 2.511±0.69 1.005±0.10 3.453±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CB CIL_0004CB_0002 CGP 13:36819224-36920765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005634 IEA nucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044373 Rfxap-001 protein_coding Mus_musculus 0 462
ENSMUST00000182246 Rfxap-003 processed_transcript Mus_musculus 0 274
ENSMUST00000182084 Rfxap-002 processed_transcript Mus_musculus 0 196

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