C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004CB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076891-ENSDARG00000021938 CGP 7955 10:35982021-36004657
GeneTranscriptPositionBiotype
ENSDARG00000021938 (smad9)
MAD homolog 9 (Drosophila)
ENSDART00000028618 (smad9-201) 35985042-36004154 protein_coding
ENSDART00000132823 (smad9-001) 35985042-36004657 protein_coding
ENSDART00000138281 (smad9-003) 35989202-35993341 retained_intron
ENSDART00000145509 (smad9-002) 35989411-36000161 processed_transcript
CIL_0004CB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133111-ENSG00000120693 CGP 9606 13:36819224-36920765
GeneTranscriptPositionBiotype
ENSG00000120693 (SMAD9)
SMAD family member 9
ENST00000350148 (SMAD9-001) 36844831-36920238 protein_coding
ENST00000379826 (SMAD9-201) 36844831-36920272 protein_coding
ENST00000399275 (SMAD9-002) 36844831-36879829 protein_coding
ENST00000483941 (SMAD9-003) 36879462-36920765 processed_transcript
ENSG00000133111 (RFXAP)
regulatory factor X-associated protein
ENST00000255476 (RFXAP-001) 36819224-36829104 protein_coding
ENST00000472888 (RFXAP-002) 36825426-36829097 processed_transcript
ENSG00000236711 (SMAD9-IT1)
SMAD9 intronic transcript 1
ENST00000437983 (SMAD9-IT1-001) 36849366-36850046 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CB_0001ENSDARG00000021938ENSDART00000028618ENSDART00000132823ENSDART00000138281ENSDART00000145509CIL_0004CB_0002ENSG00000120693ENST00000350148ENST00000379826ENST00000399275ENST00000483941ENSG00000133111ENST00000255476ENST00000472888ENSG00000236711ENST00000437983
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CB_0001ENSDARG00000021938ENSDART00000028618ENSDART00000132823CIL_0004CB_0002ENSG00000120693ENST00000350148ENST00000379826ENST00000399275ENSG00000133111ENST00000255476ENSG00000236711ENST00000437983
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021938 ENSDART00000028618 N/A N/A N/A 4.011±0.79 N/A N/A 63.057±49.42 14.281±10.37 N/A N/A 2.645±0.00 N/A N/A N/A
ENSDART00000132823 N/A N/A N/A N/A N/A N/A 3.694±1.15 0.609±0.00 0.770±0.00 N/A N/A N/A N/A N/A
ENSDART00000138281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120693 ENST00000350148 1.010±0.00 N/A 0.401±0.00 2.301±1.61 1.066±0.00 2.647±1.07 0.714±0.00 0.981±0.00 1.040±0.82 1.423±0.25 0.305±0.00 1.218±1.03 0.264±0.00 2.165±0.00
ENST00000379826 1.231±0.00 0.855±0.00 N/A N/A N/A N/A N/A N/A 1.420±0.00 0.279±0.00 N/A 0.298±0.04 0.847±0.18 N/A
ENST00000399275 0.472±0.00 1.346±0.00 N/A 2.469±1.41 1.588±1.30 N/A 0.327±0.05 1.283±0.00 N/A 1.015±0.00 0.536±0.12 1.719±1.06 0.257±0.00 3.021±0.00
ENST00000483941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133111 ENST00000255476 1.517±0.00 2.170±0.00 0.213±0.00 1.867±1.33 1.471±0.16 0.731±0.09 0.966±0.00 0.686±0.60 0.315±0.05 0.705±0.00 0.330±0.27 2.511±0.69 1.005±0.10 3.453±0.42
ENST00000472888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236711 ENST00000437983 0.444±0.00 0.490±0.00 N/A 0.062±0.00 0.572±0.00 0.390±0.02 0.143±0.00 0.391±0.00 0.022±0.00 N/A N/A 0.196±0.00 0.050±0.00 0.082±0.00

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