C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HNF1 homeobox A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257555 HNF1A-001 ENSG00000135100 9606 + 12:120978543-121002512 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Z CIL_00075Z_0002 CGP 12:120978543-121016502

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001221 IEA transcription cofactor binding
GO:0001750 IEA photoreceptor outer segment
GO:0001824 IEA blastocyst development
GO:0001889 IEA liver development
GO:0001890 IEA placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006633 IEA fatty acid biosynthetic process
GO:0006699 IEA bile acid biosynthetic process
GO:0006783 IEA heme biosynthetic process
GO:0006979 IEA response to oxidative stress
GO:0008104 IEA protein localization
GO:0008134 IEA transcription factor binding
GO:0008203 IEA cholesterol metabolic process
GO:0009749 IEA response to glucose
GO:0015721 IEA bile acid and bile salt transport
GO:0015908 IEA fatty acid transport
GO:0030073 IEA insulin secretion
GO:0030111 IEA regulation of Wnt signaling pathway
GO:0030326 IEA embryonic limb morphogenesis
GO:0031018 IEA endocrine pancreas development
GO:0035623 IEA renal glucose absorption
GO:0042593 IEA glucose homeostasis
GO:0042803 IEA protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0043691 IEA reverse cholesterol transport
GO:0045120 IEA pronucleus
GO:0045453 IEA bone resorption
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046323 IEA glucose import
GO:0046883 IEA regulation of hormone secretion
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0048341 IEA paraxial mesoderm formation
GO:0048608 IEA reproductive structure development
GO:0050796 IEA regulation of insulin secretion
GO:0060395 IEA SMAD protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031535 Hnf1a-001 protein_coding Mus_musculus 0 2481
ENSMUST00000176911 Hnf1a-003 nonsense_mediated_decay Mus_musculus 0 1604
ENSMUST00000176550 Hnf1a-002 nonsense_mediated_decay Mus_musculus 0 904
ENSMUST00000184027 Hnf1a-004 retained_intron Mus_musculus 0 592

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