C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HNF1 homeobox A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135100 HNF1A 9606 + 12:120978543-121002512 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257555 HNF1A-001 120978543-121002512 protein_coding
  ENST00000400024 HNF1A-002 120978568-120998300 protein_coding
  ENST00000402929 HNF1A-003 120978634-120998300 retained_intron
  ENST00000535955 HNF1A-020 120978651-120997882 processed_transcript
  ENST00000538626 HNF1A-017 120978651-120997882 processed_transcript
  ENST00000538646 HNF1A-015 120978651-120997882 nonsense_mediated_decay
  ENST00000540108 HNF1A-024 120978746-121002512 nonsense_mediated_decay
  ENST00000541395 HNF1A-023 120978746-121002512 protein_coding
  ENST00000541924 HNF1A-014 120978651-120997882 nonsense_mediated_decay
  ENST00000543255 HNF1A-021 120996390-120997882 retained_intron
  ENST00000543427 HNF1A-201 120978626-121002509 protein_coding
  ENST00000544413 HNF1A-025 120978749-121001269 protein_coding
  ENST00000544574 HNF1A-016 120978651-120997882 nonsense_mediated_decay
  ENST00000560968 HNF1A-006 120978626-121002509 nonsense_mediated_decay
  ENST00000615446 HNF1A-202 120978626-121002509 protein_coding
  ENST00000617366 HNF1A-203 120978626-121002509 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverOvaryENST00000544413
Transcript ID Kidney Liver Ovary
ENST00000544413 3.944±0.00 5.217±0.00 8.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Z CIL_00075Z_0002 CGP 12:120978543-121016502

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001221 IEA transcription cofactor binding
GO:0001750 IEA photoreceptor outer segment
GO:0001824 IEA blastocyst development
GO:0001889 IEA liver development
GO:0001890 IEA placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006633 IEA fatty acid biosynthetic process
GO:0006699 IEA bile acid biosynthetic process
GO:0006783 IEA heme biosynthetic process
GO:0006979 IEA response to oxidative stress
GO:0008104 IEA protein localization
GO:0008134 IEA transcription factor binding
GO:0008203 IEA cholesterol metabolic process
GO:0009749 IEA response to glucose
GO:0015721 IEA bile acid and bile salt transport
GO:0015908 IEA fatty acid transport
GO:0030073 IEA insulin secretion
GO:0030111 IEA regulation of Wnt signaling pathway
GO:0030326 IEA embryonic limb morphogenesis
GO:0031018 IEA endocrine pancreas development
GO:0035623 IEA renal glucose absorption
GO:0042593 IEA glucose homeostasis
GO:0042803 IEA protein homodimerization activity
GO:0043234 IDA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0043691 IEA reverse cholesterol transport
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045120 IEA pronucleus
GO:0045453 IEA bone resorption
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046323 IEA glucose import
GO:0046883 IEA regulation of hormone secretion
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0048341 IEA paraxial mesoderm formation
GO:0048608 IEA reproductive structure development
GO:0050796 IEA regulation of insulin secretion
GO:0060261 IGI positive regulation of transcription initiation from RNA polymerase II promoter
GO:0060395 IEA SMAD protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009470 hnf1a HNF1 homeobox a protein_coding Danio_rerio
ENSMUSG00000029556 Hnf1a HNF1 homeobox A protein_coding Mus_musculus

Loading