C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258281 TAF5L-201 ENSG00000135801 9606 - 1:229593121-229626047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258281 4.400±0.00 6.488±0.00 0.661±0.00 2.224±1.19 4.008±0.00 3.624±0.00 3.100±0.00 2.939±0.66 1.711±0.95 2.601±0.00 2.023±0.92 2.779±1.57 3.112±1.03 2.366±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005S7 CIL_0005S7_0001 CGP 1:229516582-229626047
CIL_0005S6 CIL_0005S6_0001 CGP 1:229593111-229660199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006325 TAS chromatin organization
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043966 IDA histone H3 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165628 Taf5l-202 protein_coding Mus_musculus 0 2052
ENSMUST00000093039 Taf5l-201 protein_coding Mus_musculus 0 1986
ENSMUST00000140537 Gm13316-001 processed_pseudogene Mus_musculus 0 791

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