C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UTP20, small subunit (SSU) processome component, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261637 UTP20-001 ENSG00000120800 9606 + 12:101280109-101386616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261637 0.906±0.00 0.973±0.00 1.562±0.00 0.133±0.00 1.605±1.16 1.378±0.71 0.902±0.12 0.921±0.34 0.532±0.22 1.309±0.99 0.721±0.23 2.249±1.90 0.859±0.25 1.314±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007I9 CIL_0007I9_0002 CGP 12:101280109-101407820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000447 ISS endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 ISS endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 ISS endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006364 IMP rRNA processing
GO:0008285 TAS negative regulation of cell proliferation
GO:0030686 ISS 90S preribosome
GO:0030688 ISS preribosome, small subunit precursor
GO:0032040 ISS small-subunit processome
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004470 Utp20-201 protein_coding Mus_musculus 0 8235
ENSMUST00000156725 Fbxl18-002 retained_intron Mus_musculus 0.0004 53

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