C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265081 MSH3-001 ENSG00000113318 9606 + 5:80654648-80876460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265081 2.549±0.00 1.236±0.00 2.658±0.00 2.723±0.01 4.070±0.80 3.086±0.82 1.363±0.00 3.221±0.09 2.593±0.99 1.917±0.62 1.328±1.13 2.287±0.83 2.532±1.08 3.543±0.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IBA nuclear chromosome
GO:0000403 IBA Y-form DNA binding
GO:0000404 IBA heteroduplex DNA loop binding
GO:0000406 IBA double-strand/single-strand DNA junction binding
GO:0000710 IBA meiotic mismatch repair
GO:0003677 IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IBA ATP catabolic process
GO:0006281 IDA DNA repair
GO:0006298 IMP:IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0016020 IDA membrane
GO:0016447 IBA somatic recombination of immunoglobulin gene segments
GO:0019237 IEA centromeric DNA binding
GO:0019899 IPI enzyme binding
GO:0030983 IDA:IEA mismatched DNA binding
GO:0032139 IDA dinucleotide insertion or deletion binding
GO:0032142 IDA single guanine insertion binding
GO:0032181 IDA dinucleotide repeat insertion binding
GO:0032302 IDA MutSbeta complex
GO:0032357 IDA oxidized purine DNA binding
GO:0043570 IMP maintenance of DNA repeat elements
GO:0045910 IDA negative regulation of DNA recombination
GO:0051096 IDA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185852 Msh3-004 protein_coding Mus_musculus 0 2728
ENSMUST00000022220 Msh3-002 protein_coding Mus_musculus 0 2713
ENSMUST00000191550 Msh3-001 nonsense_mediated_decay Mus_musculus 0 2290
ENSMUST00000191304 Msh3-010 retained_intron Mus_musculus 0 1179
ENSMUST00000186392 Msh3-011 retained_intron Mus_musculus 0 806
ENSMUST00000191242 Msh3-005 processed_transcript Mus_musculus 0 702
ENSMUST00000187831 Msh3-008 processed_transcript Mus_musculus 0 649
ENSMUST00000191509 Msh3-003 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000186878 Msh3-007 retained_intron Mus_musculus 0 424
ENSMUST00000190761 Msh3-014 protein_coding Mus_musculus 0 387
ENSMUST00000190393 Msh3-006 nonsense_mediated_decay Mus_musculus 0 287

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