C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185852 Msh3-004 ENSMUSG00000014850 10090 - 13:92211872-92354995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryTestisENSMUST00000185852
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Testis
ENSMUST00000185852 0.930±0.16 0.891±0.04 1.788±0.00 1.120±0.00 0.546±0.13 0.370±0.00 0.654±0.00 1.256±0.48 1.824±0.78 1.170±0.50

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IBA nuclear chromosome
GO:0000403 IBA Y-form DNA binding
GO:0000404 IBA heteroduplex DNA loop binding
GO:0000406 IBA double-strand/single-strand DNA junction binding
GO:0000710 IBA meiotic mismatch repair
GO:0003677 IGI DNA binding
GO:0003684 IGI damaged DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006200 IBA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006298 IGI mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0016020 IEA membrane
GO:0016447 IMP somatic recombination of immunoglobulin gene segments
GO:0019237 IDA centromeric DNA binding
GO:0019899 IEA enzyme binding
GO:0032139 IEA dinucleotide insertion or deletion binding
GO:0032142 IEA single guanine insertion binding
GO:0032181 IEA dinucleotide repeat insertion binding
GO:0032302 IBA MutSbeta complex
GO:0032357 IEA oxidized purine DNA binding
GO:0043570 IBA maintenance of DNA repeat elements
GO:0045910 IEA negative regulation of DNA recombination
GO:0051096 IEA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265081 MSH3-001 protein_coding Homo_sapiens 0 2728
ENST00000512258 MSH3-003 processed_transcript Homo_sapiens 0 551

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