C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265339 UBE2B-001 ENSG00000119048 9606 + 5:134371179-134391992 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265339 5.481±0.00 2.967±0.00 0.901±0.00 4.127±0.00 4.467±2.71 9.863±0.00 5.063±4.00 8.341±0.00 2.048±0.49 9.006±0.00 14.445±0.00 4.286±3.17 3.802±1.29 6.011±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IMP protein polyubiquitination
GO:0000785 ISS chromatin
GO:0000790 IEA nuclear chromatin
GO:0001666 IEA response to hypoxia
GO:0001701 IEA in utero embryonic development
GO:0001741 IEA XY body
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006281 IGI DNA repair
GO:0006301 IDA postreplication repair
GO:0006344 IEA maintenance of chromatin silencing
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0006513 IMP protein monoubiquitination
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007283 TAS spermatogenesis
GO:0007288 IEA sperm axoneme assembly
GO:0009411 IGI response to UV
GO:0010845 IEA positive regulation of reciprocal meiotic recombination
GO:0016567 IDA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0031056 IEA regulation of histone modification
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0033128 IEA negative regulation of histone phosphorylation
GO:0033503 IDA HULC complex
GO:0033522 IMP histone H2A ubiquitination
GO:0042493 IDA response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043951 IDA negative regulation of cAMP-mediated signaling
GO:0050821 IMP protein stabilization
GO:0051026 IEA chiasma assembly
GO:0051865 IDA protein autoubiquitination
GO:0060070 ISS canonical Wnt signaling pathway
GO:0070076 IEA histone lysine demethylation
GO:0070193 IEA synaptonemal complex organization
GO:0070534 IDA protein K63-linked ubiquitination
GO:0070936 IDA protein K48-linked ubiquitination
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020657 Ube2b-001 protein_coding Mus_musculus 0 2037
ENSMUST00000109086 Ube2b-002 protein_coding Mus_musculus 0 809
ENSDART00000008490 zgc:55512-001 protein_coding Danio_rerio 0 351
ENSMUST00000124699 Ube2b-003 processed_transcript Mus_musculus 0 350
ENSDART00000133899 zgc:55512-002 processed_transcript Danio_rerio 0 276
ENSMUST00000147833 Ube2b-004 processed_transcript Mus_musculus 0 254

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