C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 4, 49kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000271628 SF3B4-001 ENSG00000143368 9606 - 1:149923317-149928344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271628 4.476±0.00 5.266±0.00 1.971±0.00 2.556±0.16 4.429±0.00 2.882±0.00 0.964±0.05 2.786±1.73 2.443±1.36 3.520±1.88 0.277±0.00 16.436±11.01 4.313±0.00 7.946±1.74

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IEA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076372 Sf3b4-001 protein_coding Mus_musculus 0 1768
ENSMUST00000100555 Gm7935-201 processed_pseudogene Mus_musculus 0 1637

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