C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281043 MYCN-001 ENSG00000134323 9606 + 2:15940564-15947007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281043 0.051±0.00 0.405±0.00 0.134±0.00 1.657±1.40 0.208±0.00 0.185±0.13 0.073±0.03 0.583±0.00 0.031±0.00 0.187±0.00 0.298±0.27 0.526±0.61 6.347±2.97 1.447±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000020 CIL_000020_0002 CGP 2:15591178-15947007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 TAS chromatin
GO:0001502 IEA cartilage condensation
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0008284 IEA positive regulation of cell proliferation
GO:0010942 IEA positive regulation of cell death
GO:0030324 IEA lung development
GO:0042733 IEA embryonic digit morphogenesis
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048712 IEA negative regulation of astrocyte differentiation
GO:0048754 IEA branching morphogenesis of an epithelial tube
GO:2000378 IEA negative regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043396 Mycn-001 protein_coding Mus_musculus 0 2431
ENSMUST00000130990 Mycn-002 protein_coding Mus_musculus 0 2303
ENSMUST00000151534 Mycn-003 processed_transcript Mus_musculus 1.96182e-44 185
ENSDART00000024104 mycn-001 protein_coding Danio_rerio 1e-16 94
ENSMUST00000030407 Mycl-001 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000106252 Mycl-002 protein_coding Mus_musculus 0.0000003 62

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