C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000020_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032117-ENSDARG00000006837 CGP 7955 20:33214105-33338265
GeneTranscriptPositionBiotype
ENSDARG00000006837 (mycn)
v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 		ENSDART00000024104 (mycn-001) 33333309-33338265 protein_coding
ENSDARG00000032117 (ddx1)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 		ENSDART00000023963 (ddx1-201) 33214105-33228744 protein_coding
ENSDART00000131785 (ddx1-001) 33214224-33228533 protein_coding
CIL_000020_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000079785-ENSG00000134323 CGP 9606 2:15591178-15947007
GeneTranscriptPositionBiotype
ENSG00000079785 (DDX1)
DEAD (Asp-Glu-Ala-Asp) box helicase 1 		ENST00000233084 (DDX1-201) 15591621-15631109 protein_coding
ENST00000381341 (DDX1-001) 15591178-15631111 protein_coding
ENST00000434671 (DDX1-002) 15591483-15595177 protein_coding
ENST00000459706 (DDX1-003) 15617305-15621387 retained_intron
ENST00000470674 (DDX1-005) 15621092-15628736 retained_intron
ENST00000478695 (DDX1-004) 15623533-15627557 retained_intron
ENST00000617198 (DDX1-202) 15591851-15631100 protein_coding
ENST00000621973 (DDX1-203) 15599153-15631109 protein_coding
ENSG00000134323 (MYCN)
v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 		ENST00000281043 (MYCN-001) 15940564-15947007 protein_coding
ENSG00000214657 (RP11-120J4.1)
 ENST00000398740 (RP11-120J4.1-001) 15869939-15870243 processed_pseudogene
ENSG00000223850 (MYCNUT)
MYCN upstream transcript (non-protein coding) 		ENST00000433810 (MYCNUT-001) 15920399-15936017 lincRNA
ENSG00000224194 (AC008278.3)
 ENST00000431117 (AC008278.3-001) 15668684-15680484 antisense
ENSG00000233718 (MYCNOS)
MYCN opposite strand 		ENST00000419083 (MYCNOS-002) 15939898-15941723 antisense
ENST00000420452 (MYCNOS-001) 15936265-15941582 antisense
ENST00000439180 (MYCNOS-004) 15940121-15941238 antisense
ENST00000448719 (MYCNOS-003) 15940185-15942249 antisense
ENST00000453400 (MYCNOS-005) 15921037-15941248 antisense
ENSG00000237326 (AC113608.1)
 ENST00000448379 (AC113608.1-001) 15801747-15810877 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000020_0001ENSDARG00000006837ENSDART00000024104ENSDARG00000032117ENSDART00000023963ENSDART00000131785CIL_000020_0002ENSG00000079785ENST00000233084ENST00000381341ENST00000434671ENST00000459706ENST00000470674ENST00000478695ENST00000617198ENST00000621973ENSG00000134323ENST00000281043ENSG00000214657ENST00000398740ENSG00000223850ENST00000433810ENSG00000224194ENST00000431117ENSG00000233718ENST00000419083ENST00000420452ENST00000439180ENST00000448719ENST00000453400ENSG00000237326ENST00000448379
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000020_0001ENSDARG00000006837ENSDART00000024104ENSDARG00000032117ENSDART00000023963ENSDART00000131785CIL_000020_0002ENSG00000079785ENST00000233084ENST00000381341ENST00000617198ENST00000621973ENSG00000134323ENST00000281043ENSG00000214657ENST00000398740ENSG00000223850ENST00000433810ENSG00000224194ENST00000431117ENSG00000233718ENST00000419083ENST00000420452ENST00000448719ENSG00000237326ENST00000448379
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006837 ENSDART00000024104 N/A N/A N/A 6.184±1.99 N/A N/A 2.480±1.17 0.439±0.22 0.016±0.00 N/A 2.002±0.00 N/A N/A N/A
ENSDARG00000032117 ENSDART00000023963 N/A N/A N/A 9.771±5.88 N/A N/A 8.795±4.62 6.697±4.69 0.480±0.00 N/A 6.157±0.00 N/A N/A N/A
ENSDART00000131785 N/A N/A N/A 3.291±0.00 N/A N/A 2.720±0.00 N/A 1.152±0.00 N/A 1.109±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079785 ENST00000233084 21.340±0.00 14.991±0.00 7.387±0.00 31.100±10.86 14.700±7.49 18.548±6.06 19.206±8.60 14.935±3.99 8.814±2.38 6.756±0.58 18.039±9.84 16.506±15.69 20.892±16.45 37.621±14.29
ENST00000381341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.118±0.00 N/A N/A
ENST00000434671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617198 N/A N/A N/A 6.461±0.00 N/A N/A N/A N/A N/A N/A 9.004±0.00 8.563±0.00 N/A 8.023±0.00
ENST00000621973 10.508±0.00 15.592±0.00 N/A N/A 18.002±0.00 9.520±0.00 7.709±0.00 20.764±0.00 9.973±0.00 6.863±0.00 N/A 17.362±0.00 13.538±1.59 12.586±0.00
ENSG00000134323 ENST00000281043 0.051±0.00 0.405±0.00 0.134±0.00 1.657±1.40 0.208±0.00 0.185±0.13 0.073±0.03 0.583±0.00 0.031±0.00 0.187±0.00 0.298±0.27 0.526±0.61 6.347±2.97 1.447±0.00
ENSG00000214657 ENST00000398740 0.257±0.00 0.624±0.00 N/A 0.151±0.00 0.509±0.00 0.530±0.00 0.315±0.00 0.215±0.00 0.191±0.00 0.563±0.00 3.015±0.00 0.260±0.00 N/A 0.378±0.00
ENSG00000223850 ENST00000433810 N/A N/A 0.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.779±0.00 N/A
ENSG00000224194 ENST00000431117 N/A 0.145±0.00 N/A 0.081±0.00 0.038±0.00 N/A 0.034±0.00 0.148±0.00 0.160±0.00 0.034±0.00 0.032±0.00 0.071±0.01 N/A 0.235±0.00
ENSG00000233718 ENST00000419083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.612±0.00
ENST00000420452 0.142±0.00 0.379±0.00 N/A N/A 0.191±0.00 0.145±0.00 0.021±0.00 0.112±0.00 0.329±0.00 0.215±0.00 0.039±0.00 N/A N/A N/A
ENST00000439180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.229±0.00
ENST00000453400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237326 ENST00000448379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.511±0.04 N/A 0.084±0.00

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