C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 1 open reading frame 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287859 C1orf27-001 ENSG00000157181 9606 + 1:186375869-186421378 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287859 1.503±0.00 1.500±0.00 1.506±0.00 1.994±0.00 2.759±0.09 2.194±0.69 1.510±0.63 3.340±1.17 2.948±1.20 2.182±0.13 0.811±0.40 3.728±0.90 2.295±0.11 2.691±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BN CIL_0001BN_0002 CGP 1:186311652-186421378

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094477 BC003331-004 nonsense_mediated_decay Mus_musculus 0 1550
ENSMUST00000111913 BC003331-001 protein_coding Mus_musculus 0 1524
ENSMUST00000097546 BC003331-201 protein_coding Mus_musculus 0 889
ENSMUST00000006167 BC003331-002 protein_coding Mus_musculus 0 889
ENSMUST00000148389 BC003331-005 processed_transcript Mus_musculus 0 867
ENSMUST00000097547 BC003331-003 protein_coding Mus_musculus 0 760
ENSMUST00000150615 BC003331-006 retained_intron Mus_musculus 0 555
ENSMUST00000140112 BC003331-007 retained_intron Mus_musculus 0 329

Loading