C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dachsous cadherin-related 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299441 DCHS1-001 ENSG00000166341 9606 - 11:6621323-6655854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299441 6.439±0.00 6.576±0.00 0.510±0.00 0.975±0.47 2.553±1.16 3.672±2.50 1.529±0.74 1.271±0.75 1.607±0.73 5.968±4.19 0.361±0.02 3.080±1.92 6.825±1.10 2.926±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WC CIL_0003WC_0001 CGP 11:6612763-6655854
CIL_0003VT CIL_0003VT_0001 CGP 11:6621323-6683401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001658 IEA branching involved in ureteric bud morphogenesis
GO:0001822 IEA kidney development
GO:0003007 IEA heart morphogenesis
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016020 NAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0021915 IEA neural tube development
GO:0022008 ISS neurogenesis
GO:0035329 ISS hippo signaling
GO:0036342 IEA post-anal tail morphogenesis
GO:0043931 IEA ossification involved in bone maturation
GO:0045177 IEA apical part of cell
GO:0048565 IEA digestive tract development
GO:0090102 IEA cochlea development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078482 Dchs1-201 protein_coding Mus_musculus 0 11840
ENSMUST00000144189 Dchs1-001 protein_coding Mus_musculus 0 11830
ENSMUST00000154659 Dchs1-002 protein_coding Mus_musculus 0 4457
ENSMUST00000140959 Dchs1-003 retained_intron Mus_musculus 0 460
ENSMUST00000131504 Gm15645-001 processed_transcript Mus_musculus 0 291

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