C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166341-ENSG00000158042 CGP 9606 11:6621323-6683401
GeneTranscriptPositionBiotype
ENSG00000158042 (MRPL17)
mitochondrial ribosomal protein L17 		ENST00000288937 (MRPL17-001) 6680782-6683401 protein_coding
ENST00000529958 (MRPL17-002) 6681951-6683296 retained_intron
ENST00000532203 (MRPL17-004) 6682149-6683316 protein_coding
ENST00000532676 (MRPL17-003) 6681151-6682400 processed_transcript
ENSG00000166341 (DCHS1)
dachsous cadherin-related 1 		ENST00000299441 (DCHS1-001) 6621323-6655854 protein_coding
ENSG00000255390 (RP11-732A19.5)
 ENST00000526456 (RP11-732A19.5-001) 6621451-6622322 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003VT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036862-ENSMUSG00000030879 CGP 10090 7:105752989-105811099
GeneTranscriptPositionBiotype
ENSMUSG00000030879 (Mrpl17)
mitochondrial ribosomal protein L17 		ENSMUST00000033170 (Mrpl17-002) 105809680-105810996 retained_intron
ENSMUST00000124482 (Mrpl17-001) 105806658-105811099 protein_coding
ENSMUST00000176158 (Mrpl17-003) 105809657-105810958 nonsense_mediated_decay
ENSMUST00000176498 (Mrpl17-005) 105809765-105810999 processed_transcript
ENSMUST00000176887 (Mrpl17-004) 105810121-105811028 protein_coding
ENSMUSG00000036862 (Dchs1)
dachsous 1 (Drosophila) 		ENSMUST00000078482 (Dchs1-201) 105752989-105787550 protein_coding
ENSMUST00000140959 (Dchs1-003) 105756976-105757889 retained_intron
ENSMUST00000144189 (Dchs1-001) 105752990-105787654 protein_coding
ENSMUST00000154659 (Dchs1-002) 105763645-105787552 protein_coding
ENSMUSG00000086414 (Gm15645)
predicted gene 15645 		ENSMUST00000131504 (Gm15645-001) 105762321-105863650 processed_transcript
ENSMUST00000183393 (Gm15645-002) 105861768-105863331 transcribed_processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VT_0001ENSG00000158042ENST00000288937ENST00000529958ENST00000532203ENST00000532676ENSG00000166341ENST00000299441ENSG00000255390ENST00000526456CIL_0003VT_0002ENSMUSG00000030879ENSMUST00000033170ENSMUST00000124482ENSMUST00000176158ENSMUST00000176498ENSMUST00000176887ENSMUSG00000036862ENSMUST00000078482ENSMUST00000140959ENSMUST00000144189ENSMUST00000154659ENSMUSG00000086414ENSMUST00000131504ENSMUST00000183393
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VT_0001ENSG00000158042ENST00000288937ENST00000529958ENST00000532203ENST00000532676ENSG00000166341ENST00000299441ENSG00000255390ENST00000526456CIL_0003VT_0002ENSMUSG00000030879ENSMUST00000033170ENSMUST00000124482ENSMUST00000176158ENSMUST00000176498ENSMUST00000176887ENSMUSG00000036862ENSMUST00000078482ENSMUST00000144189ENSMUSG00000086414ENSMUST00000131504
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158042 ENST00000288937 1.312±0.00 1.474±0.00 4.561±0.00 3.920±2.14 2.632±0.87 2.931±0.82 3.314±1.31 2.342±0.43 2.642±1.47 2.878±0.36 3.101±1.17 4.841±0.73 7.467±0.61 3.108±0.20
ENST00000529958 8.621±0.00 16.294±0.00 N/A 5.869±1.59 9.399±0.00 7.623±3.53 6.301±4.41 8.931±5.53 6.376±4.79 18.546±15.62 5.183±0.00 13.718±6.22 27.025±14.06 10.064±4.98
ENST00000532203 5.566±0.00 10.706±0.00 N/A 9.547±0.00 10.394±0.00 14.517±0.00 12.338±0.00 13.644±0.00 11.620±0.00 26.763±0.00 4.770±0.00 22.264±0.00 23.653±0.00 13.368±1.39
ENST00000532676 N/A 13.163±0.00 N/A N/A N/A N/A N/A 14.106±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000166341 ENST00000299441 6.439±0.00 6.576±0.00 0.510±0.00 0.975±0.47 2.553±1.16 3.672±2.50 1.529±0.74 1.271±0.75 1.607±0.73 5.968±4.19 0.361±0.02 3.080±1.92 6.825±1.10 2.926±0.02
ENSG00000255390 ENST00000526456 13.914±0.00 23.217±0.00 N/A N/A 12.377±0.00 19.384±0.00 4.811±0.00 4.318±0.00 2.661±0.00 28.735±0.00 1.668±0.00 20.072±12.91 20.133±1.27 7.946±4.35
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030879 ENSMUST00000033170 10.781±1.46 14.583±0.57 N/A N/A 11.824±0.00 10.931±3.30 N/A 10.306±0.00 9.807±1.43 7.989±1.79 N/A 13.143±1.56 N/A N/A
ENSMUST00000124482 6.589±0.73 14.088±4.12 2.375±0.14 2.444±1.44 7.160±2.74 10.013±2.25 3.448±0.36 5.411±1.31 5.178±2.30 5.940±0.49 1.910±0.39 8.748±4.27 2.695±2.36 1.713±0.20
ENSMUST00000176158 19.386±6.62 N/A 10.217±2.73 5.015±0.49 14.890±0.89 N/A 8.162±1.37 16.467±2.80 15.865±2.03 N/A 6.572±0.88 12.797±0.22 12.663±8.76 3.628±0.51
ENSMUST00000176498 47.454±18.01 N/A 38.204±0.00 25.686±2.26 42.806±7.34 25.335±2.51 25.658±3.08 43.063±5.92 35.746±13.70 17.179±2.36 31.062±5.14 46.452±15.22 66.695±37.45 14.923±1.46
ENSMUST00000176887 88.859±4.75 121.536±20.90 33.386±0.00 26.633±8.87 69.553±14.37 69.403±10.24 29.825±3.29 68.702±4.68 59.172±9.49 51.109±6.06 N/A 130.419±30.38 62.709±22.36 22.667±3.61
ENSMUSG00000036862 ENSMUST00000078482 7.149±3.20 1.227±0.33 2.020±0.06 13.008±7.90 3.184±0.96 1.340±0.36 2.079±0.52 1.693±0.17 0.304±0.13 3.469±0.26 0.530±0.10 4.509±1.46 0.984±0.20 0.489±0.36
ENSMUST00000140959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144189 2.452±0.00 2.138±0.41 N/A 3.479±0.61 2.326±0.42 1.662±0.43 0.445±0.00 0.528±0.16 0.073±0.02 1.529±0.69 N/A 4.647±1.29 N/A N/A
ENSMUST00000154659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086414 ENSMUST00000131504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.723±0.00
ENSMUST00000183393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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